Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6fai:A (3.4) BS01 rna ? GO:0000028 ... P32905 29459436
    2 6fai:B (3.4) BS01 rna ? GO:0000462 ... P33442 29459436
    3 6fai:C (3.4) BS01 rna ? GO:0000054 ... P25443 29459436
    4 6fai:D (3.4) BS01 rna ? GO:0000054 ... P05750 29459436
    5 6fai:E (3.4) BS01 rna ? GO:0002181 ... P0CX35 29459436
    6 6fai:F (3.4) BS01 rna ? GO:0000028 ... P26783 29459436
    7 6fai:G (3.4) BS01 rna ? GO:0000462 ... P0CX37 29459436
    8 6fai:H (3.4) BS01 rna ? GO:0002181 ... P26786 29459436
    9 6fai:I (3.4) BS01 rna ? GO:0000462 ... P0CX39 29459436
    10 6fai:J (3.4) BS01 rna ? GO:0000462 ... O13516 29459436
    11 6fai:L (3.4) BS01 rna ? GO:0000028 ... P0CX47 29459436
    12 6fai:M (3.4) BS01 rna ? GO:0000028 ... P48589 29459436
    13 6fai:N (3.4) BS01 rna ? GO:0000462 ... P05756 29459436
    14 6fai:O (3.4) BS01 rna ? GO:0000028 ... P06367 29459436
    15 6fai:P (3.4) BS01 rna ? GO:0000028 ... Q01855 29459436
    16 6fai:Q (3.4) BS01 rna ? GO:0000462 ... P0CX51 29459436
    17 6fai:R (3.4) BS01 rna ? GO:0000028 ... P02407 29459436
    18 6fai:S (3.4) BS01 rna ? GO:0000054 ... P0CX55 29459436
    19 6fai:T (3.4) BS01 rna ? GO:0000028 ... P07280 29459436
    20 6fai:U (3.4) BS01 rna ? GO:0000462 ... P38701 29459436
    21 6fai:V (3.4) BS01 rna ? GO:0000447 ... P0C0V8 29459436
    22 6fai:W (3.4) BS01 rna ? GO:0002181 ... P0C0W1 29459436
    23 6fai:X (3.4) BS01 rna ? GO:0000462 ... P0CX29 29459436
    24 6fai:Y (3.4) BS01 rna ? GO:0000462 ... P0CX31 29459436
    25 6fai:Z (3.4) BS01 rna ? GO:0002181 ... Q3E792 29459436
    26 6fai:b (3.4) BS01 rna ? GO:0000028 ... P35997 29459436
    27 6fai:b (3.4) BS02 ZN ? GO:0000028 ... P35997 29459436
    28 6fai:c (3.4) BS01 rna ? GO:0000028 ... Q3E7X9 29459436
    29 6fai:d (3.4) BS01 rna ? GO:0002181 ... P41057 29459436
    30 6fai:d (3.4) BS02 ZN ? GO:0002181 ... P41057 29459436
    31 6fai:e (3.4) BS01 rna ? GO:0002181 ... P0CX33 29459436
    32 6fai:g (3.4) BS01 rna ? GO:0001965 ... P38011 29459436
    33 6fai:h (3.4) BS01 rna ? GO:0000056 ... Q99216 29459436
    34 6fai:i (3.4) BS01 rna ? GO:0000447 ... P38333 29459436
    35 6fai:k (3.4) BS01 rna ? GO:0000461 ... Q07381 29459436
    36 6fai:l (3.4) BS01 rna 2.7.11.1 GO:0000462 ... P40160 29459436

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417