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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6d9j:9 (3.2) BS01 rna 3.6.5.- GO:0002244 ... P13639 29856316
    2 6d9j:9 (3.2) BS02 rna 3.6.5.- GO:0002244 ... P13639 29856316
    3 6d9j:9 (3.2) BS03 rna 3.6.5.- GO:0002244 ... P13639 29856316
    4 6d9j:A (3.2) BS01 rna ? GO:0002181 ... G1TT27 29856316
    5 6d9j:A (3.2) BS02 rna ? GO:0002181 ... G1TT27 29856316
    6 6d9j:B (3.2) BS01 rna ? GO:0003723 ... G1TL06 29856316
    7 6d9j:BB (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    8 6d9j:C (3.2) BS01 rna ? GO:0003723 ... G1SVW5 29856316
    9 6d9j:C (3.2) BS02 rna ? GO:0003723 ... G1SVW5 29856316
    10 6d9j:CC (3.2) BS01 rna ? GO:0003735 ... G1SS70 29856316
    11 6d9j:CC (3.2) BS02 rna ? GO:0003735 ... G1SS70 29856316
    12 6d9j:D (3.2) BS01 rna ? GO:0000027 ... P19949 29856316
    13 6d9j:D (3.2) BS02 rna ? GO:0000027 ... P19949 29856316
    14 6d9j:DD (3.2) BS01 rna N/A GO:0003723 ... N/A 29856316
    15 6d9j:E (3.2) BS01 rna ? GO:0000027 ... G1SKF7 29856316
    16 6d9j:EE (3.2) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 29856316
    17 6d9j:F (3.2) BS01 rna ? GO:0000463 ... G1SV32 29856316
    18 6d9j:F (3.2) BS02 rna ? GO:0000463 ... G1SV32 29856316
    19 6d9j:FF (3.2) BS01 rna N/A GO:0003723 ... N/A 29856316
    20 6d9j:G (3.2) BS01 rna ? N/A G1STW0 29856316
    21 6d9j:G (3.2) BS02 rna ? N/A G1STW0 29856316
    22 6d9j:GG (3.2) BS01 rna ? GO:0000028 ... G1TFM5 29856316
    23 6d9j:H (3.2) BS01 rna ? GO:0002181 ... G1SWI6 29856316
    24 6d9j:HH (3.2) BS01 rna ? GO:0000082 ... G1TM55 29856316
    25 6d9j:I (3.2) BS01 rna ? GO:0000027 ... B7NZQ2 29856316
    26 6d9j:I (3.2) BS02 rna ? GO:0000027 ... B7NZQ2 29856316
    27 6d9j:I (3.2) BS03 rna ? GO:0000027 ... B7NZQ2 29856316
    28 6d9j:II (3.2) BS01 rna ? GO:0003735 ... G1SVB0 29856316
    29 6d9j:J (3.2) BS01 rna ? GO:0003723 ... G1TUB8 29856316
    30 6d9j:J (3.2) BS02 rna ? GO:0003723 ... G1TUB8 29856316
    31 6d9j:J (3.2) BS03 rna ? GO:0003723 ... G1TUB8 29856316
    32 6d9j:JJ (3.2) BS01 rna ? GO:0000462 ... G1TJW1 29856316
    33 6d9j:K (3.2) BS01 rna ? GO:0000470 ... G1SKZ8 29856316
    34 6d9j:K (3.2) BS02 rna ? GO:0000470 ... G1SKZ8 29856316
    35 6d9j:KK (3.2) BS01 rna ? GO:0003723 ... B7NZS8 29856316
    36 6d9j:L (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    37 6d9j:L (3.2) BS02 rna N/A GO:0003735 ... N/A 29856316
    38 6d9j:LL (3.2) BS01 rna ? GO:0003723 ... G1U0Y5 29856316
    39 6d9j:M (3.2) BS01 rna ? GO:0003723 ... G1SZ12 29856316
    40 6d9j:MM (3.2) BS01 rna ? GO:0003735 ... G1TRM4 29856316
    41 6d9j:N (3.2) BS01 rna ? GO:0002181 ... G1T0C1 29856316
    42 6d9j:N (3.2) BS02 rna ? GO:0002181 ... G1T0C1 29856316
    43 6d9j:NN (3.2) BS01 rna ? GO:0003735 ... G1SFR8 29856316
    44 6d9j:O (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    45 6d9j:OO (3.2) BS01 rna ? GO:0003735 ... G1SP51 29856316
    46 6d9j:OO (3.2) BS02 rna ? GO:0003735 ... G1SP51 29856316
    47 6d9j:P (3.2) BS01 rna ? GO:0002181 ... G1SCJ6 29856316
    48 6d9j:P (3.2) BS02 rna ? GO:0002181 ... G1SCJ6 29856316
    49 6d9j:PP (3.2) BS01 rna ? GO:0000028 ... G1T1F0 29856316
    50 6d9j:Q (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    51 6d9j:QQ (3.2) BS01 rna ? GO:0000028 ... G1U0Q2 29856316
    52 6d9j:QQ (3.2) BS02 rna ? GO:0000028 ... G1U0Q2 29856316
    53 6d9j:R (3.2) BS01 rna N/A GO:0003723 ... N/A 29856316
    54 6d9j:R (3.2) BS02 rna N/A GO:0003723 ... N/A 29856316
    55 6d9j:RR (3.2) BS01 rna ? GO:0000462 ... G1SGX4 29856316
    56 6d9j:S (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    57 6d9j:S (3.2) BS02 rna N/A GO:0003735 ... N/A 29856316
    58 6d9j:SS (3.2) BS01 rna ? GO:0003735 ... G1TU13 29856316
    59 6d9j:T (3.2) BS01 rna ? GO:0003735 ... G1SHQ2 29856316
    60 6d9j:T (3.2) BS02 rna ? GO:0003735 ... G1SHQ2 29856316
    61 6d9j:TT (3.2) BS01 rna ? GO:0003676 ... G1TPG3 29856316
    62 6d9j:U (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    63 6d9j:UU (3.2) BS01 rna ? GO:0000028 ... G1TN62 29856316
    64 6d9j:V (3.2) BS01 rna ? GO:0000122 ... G1T6D1 29856316
    65 6d9j:VV (3.2) BS01 rna ? GO:0003723 ... G1SIZ2 29856316
    66 6d9j:W (3.2) BS01 rna ? GO:0000027 ... G1SE28 29856316
    67 6d9j:W (3.2) BS02 rna ? GO:0000027 ... G1SE28 29856316
    68 6d9j:X (3.2) BS01 rna ? GO:0000027 ... G1SE76 29856316
    69 6d9j:X (3.2) BS02 rna ? GO:0000027 ... G1SE76 29856316
    70 6d9j:XX (3.2) BS01 rna ? GO:0003735 ... G1TG89 29856316
    71 6d9j:Y (3.2) BS01 rna ? GO:0002181 ... G1SQH0 29856316
    72 6d9j:Y (3.2) BS02 rna ? GO:0002181 ... G1SQH0 29856316
    73 6d9j:YY (3.2) BS01 rna ? GO:0003735 ... G1SZ47 29856316
    74 6d9j:Z (3.2) BS01 rna ? GO:0003735 ... G1TXF6 29856316
    75 6d9j:ZZ (3.2) BS01 rna ? GO:0003735 ... G1T3D8 29856316
    76 6d9j:a (3.2) BS01 rna ? GO:0003735 ... G1SNY0 29856316
    77 6d9j:aa (3.2) BS01 rna ? GO:0003735 ... G1TDB3 29856316
    78 6d9j:b (3.2) BS01 rna ? GO:0002181 ... G1SGR6 29856316
    79 6d9j:bb (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    80 6d9j:bb (3.2) BS02 ZN N/A GO:0003735 ... N/A 29856316
    81 6d9j:c (3.2) BS01 rna ? GO:0002181 ... G1TDL2 29856316
    82 6d9j:cc (3.2) BS01 rna ? GO:0000028 ... G1TZ76 29856316
    83 6d9j:d (3.2) BS01 rna ? GO:0002181 ... G1SHG0 29856316
    84 6d9j:dd (3.2) BS01 rna ? GO:0000028 ... G1TIB4 29856316
    85 6d9j:e (3.2) BS01 rna ? GO:0003735 ... G1TUN8 29856316
    86 6d9j:ee (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    87 6d9j:ee (3.2) BS02 ZN N/A GO:0003735 ... N/A 29856316
    88 6d9j:f (3.2) BS01 rna ? GO:0000049 ... G1SF08 29856316
    89 6d9j:ff (3.2) BS01 rna ? GO:0003735 ... G1T8A2 29856316
    90 6d9j:g (3.2) BS01 rna ? GO:0003735 ... G1TXG5 29856316
    91 6d9j:gg (3.2) BS01 rna ? GO:0003723 ... G1SK22 29856316
    92 6d9j:gg (3.2) BS02 ZN ? GO:0003723 ... G1SK22 29856316
    93 6d9j:h (3.2) BS01 rna ? GO:0000463 ... G1SIT5 29856316
    94 6d9j:h (3.2) BS02 rna ? GO:0000463 ... G1SIT5 29856316
    95 6d9j:hh (3.2) BS01 rna ? GO:0001891 ... G1SJB4 29856316
    96 6d9j:i (3.2) BS01 rna ? GO:0002181 ... G1TTQ5 29856316
    97 6d9j:j (3.2) BS01 rna ? GO:0003723 ... U3KPD5 29856316
    98 6d9j:j (3.2) BS02 rna ? GO:0003723 ... U3KPD5 29856316
    99 6d9j:k (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    100 6d9j:l (3.2) BS01 rna ? GO:0003735 ... G1TTN1 29856316
    101 6d9j:l (3.2) BS02 rna ? GO:0003735 ... G1TTN1 29856316
    102 6d9j:m (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    103 6d9j:o (3.2) BS01 rna ? GO:0003735 ... G1T040 29856316
    104 6d9j:p (3.2) BS01 rna ? GO:0003735 ... G1SY53 29856316
    105 6d9j:p (3.2) BS02 ZN ? GO:0003735 ... G1SY53 29856316
    106 6d9j:r (3.2) BS01 rna ? GO:0003735 ... G1U7L1 29856316
    107 6d9j:s (3.2) BS01 rna N/A GO:0042254 ... N/A 29856316
    108 6d9j:t (3.2) BS01 rna ? GO:0003723 ... G1SMR7 29856316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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