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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 187 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6czr:10 (3.14) BS01 rna ? GO:0003735 ... P60493 N/A
    2 6czr:10 (3.14) BS02 rna ? GO:0003735 ... P60493 N/A
    3 6czr:10 (3.14) BS03 MG ? GO:0003735 ... P60493 N/A
    4 6czr:10 (3.14) BS04 MG ? GO:0003735 ... P60493 N/A
    5 6czr:11 (3.14) BS01 rna ? GO:0003735 ... P60494 N/A
    6 6czr:12 (3.14) BS01 rna ? GO:0003735 ... Q5SHP6 N/A
    7 6czr:13 (3.14) BS01 rna ? GO:0003735 ... Q5SHQ6 N/A
    8 6czr:13 (3.14) BS02 rna ? GO:0003735 ... Q5SHQ6 N/A
    9 6czr:13 (3.14) BS03 MG ? GO:0003735 ... Q5SHQ6 N/A
    10 6czr:14 (3.14) BS01 rna ? GO:0003735 ... Q5SJE1 N/A
    11 6czr:15 (3.14) BS01 rna ? GO:0003735 ... P80339 N/A
    12 6czr:15 (3.14) BS02 MG ? GO:0003735 ... P80339 N/A
    13 6czr:15 (3.14) BS03 ZN ? GO:0003735 ... P80339 N/A
    14 6czr:16 (3.14) BS01 rna ? GO:0000049 ... P35871 N/A
    15 6czr:16 (3.14) BS02 ZN ? GO:0000049 ... P35871 N/A
    16 6czr:17 (3.14) BS01 rna ? GO:0003735 ... P80340 N/A
    17 6czr:17 (3.14) BS02 MG ? GO:0003735 ... P80340 N/A
    18 6czr:18 (3.14) BS01 rna ? GO:0003735 ... Q5SKU1 N/A
    19 6czr:18 (3.14) BS02 MG ? GO:0003735 ... Q5SKU1 N/A
    20 6czr:18 (3.14) BS03 MG ? GO:0003735 ... Q5SKU1 N/A
    21 6czr:19 (3.14) BS01 rna ? GO:0003735 ... Q5SHR2 N/A
    22 6czr:19 (3.14) BS02 ZN ? GO:0003735 ... Q5SHR2 N/A
    23 6czr:1D (3.14) BS01 rna ? GO:0002181 ... P60405 N/A
    24 6czr:1D (3.14) BS02 rna ? GO:0002181 ... P60405 N/A
    25 6czr:1D (3.14) BS03 MG ? GO:0002181 ... P60405 N/A
    26 6czr:1D (3.14) BS04 MG ? GO:0002181 ... P60405 N/A
    27 6czr:1D (3.14) BS05 MG ? GO:0002181 ... P60405 N/A
    28 6czr:1D (3.14) BS06 MG ? GO:0002181 ... P60405 N/A
    29 6czr:1D (3.14) BS07 MG ? GO:0002181 ... P60405 N/A
    30 6czr:1D (3.14) BS08 MG ? GO:0002181 ... P60405 N/A
    31 6czr:1D (3.14) BS09 MG ? GO:0002181 ... P60405 N/A
    32 6czr:1D (3.14) BS10 MG ? GO:0002181 ... P60405 N/A
    33 6czr:1E (3.14) BS01 rna ? GO:0003735 ... Q5SHN8 N/A
    34 6czr:1E (3.14) BS02 MG ? GO:0003735 ... Q5SHN8 N/A
    35 6czr:1E (3.14) BS03 MG ? GO:0003735 ... Q5SHN8 N/A
    36 6czr:1E (3.14) BS04 MG ? GO:0003735 ... Q5SHN8 N/A
    37 6czr:1E (3.14) BS05 MG ? GO:0003735 ... Q5SHN8 N/A
    38 6czr:1F (3.14) BS01 rna ? GO:0003735 ... Q5SHN9 N/A
    39 6czr:1F (3.14) BS02 MG ? GO:0003735 ... Q5SHN9 N/A
    40 6czr:1F (3.14) BS03 MG ? GO:0003735 ... Q5SHN9 N/A
    41 6czr:1F (3.14) BS04 MG ? GO:0003735 ... Q5SHN9 N/A
    42 6czr:1F (3.14) BS05 MG ? GO:0003735 ... Q5SHN9 N/A
    43 6czr:1G (3.14) BS01 rna ? GO:0000049 ... Q5SHQ0 N/A
    44 6czr:1G (3.14) BS02 rna ? GO:0000049 ... Q5SHQ0 N/A
    45 6czr:1G (3.14) BS03 MG ? GO:0000049 ... Q5SHQ0 N/A
    46 6czr:1H (3.14) BS01 rna ? GO:0002181 ... P0DOY8 N/A
    47 6czr:1I (3.14) BS01 rna ? GO:0003735 ... Q5SLQ1 N/A
    48 6czr:1N (3.14) BS01 rna ? GO:0003729 ... P60488 N/A
    49 6czr:1N (3.14) BS02 MG ? GO:0003729 ... P60488 N/A
    50 6czr:1N (3.14) BS03 MG ? GO:0003729 ... P60488 N/A
    51 6czr:1O (3.14) BS01 rna ? GO:0003735 ... Q5SHP8 N/A
    52 6czr:1O (3.14) BS02 rna ? GO:0003735 ... Q5SHP8 N/A
    53 6czr:1P (3.14) BS01 rna ? GO:0003735 ... Q5SHQ7 N/A
    54 6czr:1P (3.14) BS02 MG ? GO:0003735 ... Q5SHQ7 N/A
    55 6czr:1Q (3.14) BS01 rna ? GO:0000049 ... P60489 N/A
    56 6czr:1Q (3.14) BS02 rna ? GO:0000049 ... P60489 N/A
    57 6czr:1Q (3.14) BS03 FSD ? GO:0000049 ... P60489 N/A
    58 6czr:1Q (3.14) BS04 MG ? GO:0000049 ... P60489 N/A
    59 6czr:1R (3.14) BS01 rna ? GO:0003735 ... Q9Z9H5 N/A
    60 6czr:1S (3.14) BS01 rna ? GO:0003735 ... Q5SHQ4 N/A
    61 6czr:1S (3.14) BS02 rna ? GO:0003735 ... Q5SHQ4 N/A
    62 6czr:1T (3.14) BS01 rna ? GO:0003735 ... P60490 N/A
    63 6czr:1T (3.14) BS02 rna ? GO:0003735 ... P60490 N/A
    64 6czr:1U (3.14) BS01 rna ? GO:0000027 ... P60491 N/A
    65 6czr:1U (3.14) BS02 MG ? GO:0000027 ... P60491 N/A
    66 6czr:1V (3.14) BS01 rna ? GO:0003723 ... P60492 N/A
    67 6czr:1V (3.14) BS02 MG ? GO:0003723 ... P60492 N/A
    68 6czr:1V (3.14) BS03 MG ? GO:0003723 ... P60492 N/A
    69 6czr:1V (3.14) BS04 MG ? GO:0003723 ... P60492 N/A
    70 6czr:1W (3.14) BS01 rna ? GO:0003735 ... Q5SHP3 N/A
    71 6czr:1X (3.14) BS01 rna ? GO:0000027 ... Q5SHP0 N/A
    72 6czr:1Y (3.14) BS01 rna ? GO:0003723 ... Q5SHP9 N/A
    73 6czr:1Y (3.14) BS02 ZN ? GO:0003723 ... Q5SHP9 N/A
    74 6czr:1Z (3.14) BS01 rna ? GO:0003723 ... Q5SHZ1 N/A
    75 6czr:1Z (3.14) BS02 rna ? GO:0003723 ... Q5SHZ1 N/A
    76 6czr:1Z (3.14) BS03 MG ? GO:0003723 ... Q5SHZ1 N/A
    77 6czr:1b (3.14) BS01 rna ? GO:0003735 ... P80371 N/A
    78 6czr:1b (3.14) BS02 MG ? GO:0003735 ... P80371 N/A
    79 6czr:1c (3.14) BS01 rna ? GO:0003676 ... P80372 N/A
    80 6czr:1d (3.14) BS01 rna ? GO:0003723 ... P80373 N/A
    81 6czr:1d (3.14) BS02 SF4 ? GO:0003723 ... P80373 N/A
    82 6czr:1e (3.14) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    83 6czr:1f (3.14) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    84 6czr:1g (3.14) BS01 rna ? GO:0000028 ... P17291 N/A
    85 6czr:1h (3.14) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    86 6czr:1i (3.14) BS01 rna ? GO:0000049 ... P80374 N/A
    87 6czr:1j (3.14) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    88 6czr:1k (3.14) BS01 rna ? GO:0003735 ... P80376 N/A
    89 6czr:1k (3.14) BS02 MG ? GO:0003735 ... P80376 N/A
    90 6czr:1l (3.14) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    91 6czr:1l (3.14) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    92 6czr:1m (3.14) BS01 rna ? GO:0000049 ... P80377 N/A
    93 6czr:1m (3.14) BS02 MG ? GO:0000049 ... P80377 N/A
    94 6czr:1n (3.14) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    95 6czr:1o (3.14) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    96 6czr:1o (3.14) BS02 rna ? GO:0003735 ... Q5SJ76 N/A
    97 6czr:1p (3.14) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    98 6czr:1q (3.14) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    99 6czr:1r (3.14) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    100 6czr:1s (3.14) BS01 rna ? GO:0003723 ... Q5SHP2 N/A
    101 6czr:1s (3.14) BS02 MG ? GO:0003723 ... Q5SHP2 N/A
    102 6czr:1t (3.14) BS01 rna ? GO:0003723 ... P80380 N/A
    103 6czr:1t (3.14) BS02 MG ? GO:0003723 ... P80380 N/A
    104 6czr:20 (3.14) BS01 rna ? GO:0003735 ... P60493 N/A
    105 6czr:20 (3.14) BS02 rna ? GO:0003735 ... P60493 N/A
    106 6czr:21 (3.14) BS01 rna ? GO:0003735 ... P60494 N/A
    107 6czr:22 (3.14) BS01 rna ? GO:0003735 ... Q5SHP6 N/A
    108 6czr:23 (3.14) BS01 rna ? GO:0003735 ... Q5SHQ6 N/A
    109 6czr:23 (3.14) BS02 rna ? GO:0003735 ... Q5SHQ6 N/A
    110 6czr:24 (3.14) BS01 rna ? GO:0003735 ... Q5SJE1 N/A
    111 6czr:25 (3.14) BS01 rna ? GO:0003735 ... P80339 N/A
    112 6czr:25 (3.14) BS02 MG ? GO:0003735 ... P80339 N/A
    113 6czr:25 (3.14) BS03 ZN ? GO:0003735 ... P80339 N/A
    114 6czr:26 (3.14) BS01 rna ? GO:0000049 ... P35871 N/A
    115 6czr:26 (3.14) BS02 ZN ? GO:0000049 ... P35871 N/A
    116 6czr:27 (3.14) BS01 rna ? GO:0003735 ... P80340 N/A
    117 6czr:28 (3.14) BS01 rna ? GO:0003735 ... Q5SKU1 N/A
    118 6czr:28 (3.14) BS02 MG ? GO:0003735 ... Q5SKU1 N/A
    119 6czr:28 (3.14) BS03 MG ? GO:0003735 ... Q5SKU1 N/A
    120 6czr:29 (3.14) BS01 rna ? GO:0003735 ... Q5SHR2 N/A
    121 6czr:29 (3.14) BS02 ZN ? GO:0003735 ... Q5SHR2 N/A
    122 6czr:2D (3.14) BS01 rna ? GO:0002181 ... P60405 N/A
    123 6czr:2D (3.14) BS02 rna ? GO:0002181 ... P60405 N/A
    124 6czr:2D (3.14) BS03 MG ? GO:0002181 ... P60405 N/A
    125 6czr:2E (3.14) BS01 rna ? GO:0003735 ... Q5SHN8 N/A
    126 6czr:2E (3.14) BS02 MG ? GO:0003735 ... Q5SHN8 N/A
    127 6czr:2F (3.14) BS01 rna ? GO:0003735 ... Q5SHN9 N/A
    128 6czr:2F (3.14) BS02 MG ? GO:0003735 ... Q5SHN9 N/A
    129 6czr:2F (3.14) BS03 MG ? GO:0003735 ... Q5SHN9 N/A
    130 6czr:2F (3.14) BS04 MG ? GO:0003735 ... Q5SHN9 N/A
    131 6czr:2G (3.14) BS01 rna ? GO:0000049 ... Q5SHQ0 N/A
    132 6czr:2G (3.14) BS02 rna ? GO:0000049 ... Q5SHQ0 N/A
    133 6czr:2G (3.14) BS03 MG ? GO:0000049 ... Q5SHQ0 N/A
    134 6czr:2H (3.14) BS01 rna ? GO:0002181 ... P0DOY8 N/A
    135 6czr:2I (3.14) BS01 rna ? GO:0003735 ... Q5SLQ1 N/A
    136 6czr:2I (3.14) BS02 MG ? GO:0003735 ... Q5SLQ1 N/A
    137 6czr:2I (3.14) BS03 MG ? GO:0003735 ... Q5SLQ1 N/A
    138 6czr:2N (3.14) BS01 rna ? GO:0003729 ... P60488 N/A
    139 6czr:2O (3.14) BS01 rna ? GO:0003735 ... Q5SHP8 N/A
    140 6czr:2O (3.14) BS02 rna ? GO:0003735 ... Q5SHP8 N/A
    141 6czr:2P (3.14) BS01 rna ? GO:0003735 ... Q5SHQ7 N/A
    142 6czr:2Q (3.14) BS01 rna ? GO:0000049 ... P60489 N/A
    143 6czr:2Q (3.14) BS02 rna ? GO:0000049 ... P60489 N/A
    144 6czr:2Q (3.14) BS03 FSD ? GO:0000049 ... P60489 N/A
    145 6czr:2R (3.14) BS01 rna ? GO:0003735 ... Q9Z9H5 N/A
    146 6czr:2R (3.14) BS02 MG ? GO:0003735 ... Q9Z9H5 N/A
    147 6czr:2S (3.14) BS01 rna ? GO:0003735 ... Q5SHQ4 N/A
    148 6czr:2S (3.14) BS02 rna ? GO:0003735 ... Q5SHQ4 N/A
    149 6czr:2T (3.14) BS01 rna ? GO:0003735 ... P60490 N/A
    150 6czr:2T (3.14) BS02 rna ? GO:0003735 ... P60490 N/A
    151 6czr:2U (3.14) BS01 rna ? GO:0000027 ... P60491 N/A
    152 6czr:2V (3.14) BS01 rna ? GO:0003723 ... P60492 N/A
    153 6czr:2V (3.14) BS02 MG ? GO:0003723 ... P60492 N/A
    154 6czr:2V (3.14) BS03 MG ? GO:0003723 ... P60492 N/A
    155 6czr:2W (3.14) BS01 rna ? GO:0003735 ... Q5SHP3 N/A
    156 6czr:2W (3.14) BS02 MG ? GO:0003735 ... Q5SHP3 N/A
    157 6czr:2W (3.14) BS03 MG ? GO:0003735 ... Q5SHP3 N/A
    158 6czr:2X (3.14) BS01 rna ? GO:0000027 ... Q5SHP0 N/A
    159 6czr:2Y (3.14) BS01 rna ? GO:0003723 ... Q5SHP9 N/A
    160 6czr:2Y (3.14) BS02 ZN ? GO:0003723 ... Q5SHP9 N/A
    161 6czr:2Z (3.14) BS01 rna ? GO:0003723 ... Q5SHZ1 N/A
    162 6czr:2Z (3.14) BS02 rna ? GO:0003723 ... Q5SHZ1 N/A
    163 6czr:2Z (3.14) BS03 MG ? GO:0003723 ... Q5SHZ1 N/A
    164 6czr:2b (3.14) BS01 rna ? GO:0003735 ... P80371 N/A
    165 6czr:2c (3.14) BS01 rna ? GO:0003676 ... P80372 N/A
    166 6czr:2d (3.14) BS01 rna ? GO:0003723 ... P80373 N/A
    167 6czr:2d (3.14) BS02 SF4 ? GO:0003723 ... P80373 N/A
    168 6czr:2e (3.14) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    169 6czr:2f (3.14) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    170 6czr:2f (3.14) BS02 MG ? GO:0003735 ... Q5SLP8 N/A
    171 6czr:2g (3.14) BS01 rna ? GO:0000028 ... P17291 N/A
    172 6czr:2h (3.14) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    173 6czr:2i (3.14) BS01 rna ? GO:0000049 ... P80374 N/A
    174 6czr:2j (3.14) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    175 6czr:2k (3.14) BS01 rna ? GO:0003735 ... P80376 N/A
    176 6czr:2l (3.14) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    177 6czr:2m (3.14) BS01 rna ? GO:0000049 ... P80377 N/A
    178 6czr:2n (3.14) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    179 6czr:2n (3.14) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    180 6czr:2o (3.14) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    181 6czr:2o (3.14) BS02 rna ? GO:0003735 ... Q5SJ76 N/A
    182 6czr:2p (3.14) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    183 6czr:2q (3.14) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    184 6czr:2r (3.14) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    185 6czr:2s (3.14) BS01 rna ? GO:0003723 ... Q5SHP2 N/A
    186 6czr:2t (3.14) BS01 rna ? GO:0003723 ... P80380 N/A
    187 6czr:2t (3.14) BS02 MG ? GO:0003723 ... P80380 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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