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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6cnb:A (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    2 6cnb:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    3 6cnb:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    4 6cnb:B (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    5 6cnb:B (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    6 6cnb:E (4.1) BS01 dna ? GO:0000428 ... P20434 30083386
    7 6cnb:I (4.1) BS01 ZN ? GO:0000428 ... Q04307 30083386
    8 6cnb:J (4.1) BS01 ZN ? GO:0000428 ... P22139 30083386
    9 6cnb:L (4.1) BS01 ZN ? GO:0000428 ... P40422 30083386
    10 6cnb:P (4.1) BS01 dna ? GO:0000428 ... P32910 30083386
    11 6cnb:R (4.1) BS01 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    12 6cnb:R (4.1) BS02 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    13 6cnb:R (4.1) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    14 6cnb:S (4.1) BS01 dna ? GO:0000126 ... P46678 30083386
    15 6cnb:S (4.1) BS02 dna ? GO:0000126 ... P46678 30083386
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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