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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 218 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6cfk:10 (2.7) BS01 rna ? GO:0003735 ... P60493 29410130
    2 6cfk:10 (2.7) BS02 rna ? GO:0003735 ... P60493 29410130
    3 6cfk:10 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    4 6cfk:10 (2.7) BS04 MG ? GO:0003735 ... P60493 29410130
    5 6cfk:11 (2.7) BS01 rna ? GO:0003735 ... P60494 29410130
    6 6cfk:11 (2.7) BS02 MG ? GO:0003735 ... P60494 29410130
    7 6cfk:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    8 6cfk:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    9 6cfk:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    10 6cfk:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    11 6cfk:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 29410130
    12 6cfk:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    13 6cfk:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    14 6cfk:15 (2.7) BS01 rna ? GO:0003735 ... P80339 29410130
    15 6cfk:15 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    16 6cfk:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    17 6cfk:16 (2.7) BS01 rna ? GO:0000049 ... P35871 29410130
    18 6cfk:16 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    19 6cfk:17 (2.7) BS01 rna ? GO:0003735 ... P80340 29410130
    20 6cfk:17 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    21 6cfk:17 (2.7) BS03 MG ? GO:0003735 ... P80340 29410130
    22 6cfk:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    23 6cfk:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    24 6cfk:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    25 6cfk:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    26 6cfk:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    27 6cfk:1D (2.7) BS01 rna ? GO:0002181 ... P60405 29410130
    28 6cfk:1D (2.7) BS02 rna ? GO:0002181 ... P60405 29410130
    29 6cfk:1D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    30 6cfk:1D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    31 6cfk:1D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    32 6cfk:1D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    33 6cfk:1D (2.7) BS07 MG ? GO:0002181 ... P60405 29410130
    34 6cfk:1D (2.7) BS08 MG ? GO:0002181 ... P60405 29410130
    35 6cfk:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 29410130
    36 6cfk:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    37 6cfk:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    38 6cfk:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    39 6cfk:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 29410130
    40 6cfk:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    41 6cfk:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    42 6cfk:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    43 6cfk:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    44 6cfk:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    45 6cfk:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    46 6cfk:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    47 6cfk:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    48 6cfk:1F (2.7) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    49 6cfk:1F (2.7) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    50 6cfk:1F (2.7) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    51 6cfk:1F (2.7) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    52 6cfk:1F (2.7) BS14 ARG ? GO:0003735 ... Q5SHN9 29410130
    53 6cfk:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 29410130
    54 6cfk:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 29410130
    55 6cfk:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    56 6cfk:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    57 6cfk:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 29410130
    58 6cfk:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 29410130
    59 6cfk:1N (2.7) BS01 rna ? GO:0003729 ... P60488 29410130
    60 6cfk:1N (2.7) BS02 MG ? GO:0003729 ... P60488 29410130
    61 6cfk:1N (2.7) BS03 MG ? GO:0003729 ... P60488 29410130
    62 6cfk:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 29410130
    63 6cfk:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 29410130
    64 6cfk:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 29410130
    65 6cfk:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    66 6cfk:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    67 6cfk:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 29410130
    68 6cfk:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 29410130
    69 6cfk:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 29410130
    70 6cfk:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 29410130
    71 6cfk:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 29410130
    72 6cfk:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 29410130
    73 6cfk:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 29410130
    74 6cfk:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    75 6cfk:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 29410130
    76 6cfk:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 29410130
    77 6cfk:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 29410130
    78 6cfk:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 29410130
    79 6cfk:1T (2.7) BS01 rna ? GO:0003735 ... P60490 29410130
    80 6cfk:1T (2.7) BS02 rna ? GO:0003735 ... P60490 29410130
    81 6cfk:1U (2.7) BS01 rna ? GO:0000027 ... P60491 29410130
    82 6cfk:1U (2.7) BS02 MG ? GO:0000027 ... P60491 29410130
    83 6cfk:1U (2.7) BS03 MG ? GO:0000027 ... P60491 29410130
    84 6cfk:1U (2.7) BS04 MG ? GO:0000027 ... P60491 29410130
    85 6cfk:1U (2.7) BS05 MG ? GO:0000027 ... P60491 29410130
    86 6cfk:1U (2.7) BS06 MG ? GO:0000027 ... P60491 29410130
    87 6cfk:1U (2.7) BS07 MG ? GO:0000027 ... P60491 29410130
    88 6cfk:1V (2.7) BS01 rna ? GO:0003723 ... P60492 29410130
    89 6cfk:1V (2.7) BS02 MG ? GO:0003723 ... P60492 29410130
    90 6cfk:1V (2.7) BS03 MG ? GO:0003723 ... P60492 29410130
    91 6cfk:1V (2.7) BS04 MG ? GO:0003723 ... P60492 29410130
    92 6cfk:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 29410130
    93 6cfk:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    94 6cfk:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 29410130
    95 6cfk:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 29410130
    96 6cfk:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    97 6cfk:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 29410130
    98 6cfk:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 29410130
    99 6cfk:1b (2.7) BS01 rna ? GO:0003735 ... P80371 29410130
    100 6cfk:1b (2.7) BS02 MG ? GO:0003735 ... P80371 29410130
    101 6cfk:1c (2.7) BS01 rna ? GO:0003676 ... P80372 29410130
    102 6cfk:1d (2.7) BS01 rna ? GO:0003723 ... P80373 29410130
    103 6cfk:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 29410130
    104 6cfk:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 29410130
    105 6cfk:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    106 6cfk:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 29410130
    107 6cfk:1g (2.7) BS01 rna ? GO:0000028 ... P17291 29410130
    108 6cfk:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 29410130
    109 6cfk:1i (2.7) BS01 rna ? GO:0000049 ... P80374 29410130
    110 6cfk:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 29410130
    111 6cfk:1k (2.7) BS01 rna ? GO:0003735 ... P80376 29410130
    112 6cfk:1k (2.7) BS02 MG ? GO:0003735 ... P80376 29410130
    113 6cfk:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 29410130
    114 6cfk:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    115 6cfk:1m (2.7) BS01 rna ? GO:0000049 ... P80377 29410130
    116 6cfk:1m (2.7) BS02 MG ? GO:0000049 ... P80377 29410130
    117 6cfk:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 29410130
    118 6cfk:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119 6cfk:1n (2.7) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    120 6cfk:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 29410130
    121 6cfk:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 29410130
    122 6cfk:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 29410130
    123 6cfk:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 29410130
    124 6cfk:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 29410130
    125 6cfk:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 29410130
    126 6cfk:1t (2.7) BS01 rna ? GO:0003723 ... P80380 29410130
    127 6cfk:1y (2.7) BS01 rna ? GO:0005515 ... P0AD49 29410130
    128 6cfk:1y (2.7) BS02 MG ? GO:0005515 ... P0AD49 29410130
    129 6cfk:20 (2.7) BS01 rna ? GO:0003735 ... P60493 29410130
    130 6cfk:20 (2.7) BS02 rna ? GO:0003735 ... P60493 29410130
    131 6cfk:20 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    132 6cfk:21 (2.7) BS01 rna ? GO:0003735 ... P60494 29410130
    133 6cfk:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    134 6cfk:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    135 6cfk:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    136 6cfk:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    137 6cfk:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    138 6cfk:25 (2.7) BS01 rna ? GO:0003735 ... P80339 29410130
    139 6cfk:25 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    140 6cfk:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    141 6cfk:26 (2.7) BS01 rna ? GO:0000049 ... P35871 29410130
    142 6cfk:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    143 6cfk:27 (2.7) BS01 rna ? GO:0003735 ... P80340 29410130
    144 6cfk:27 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    145 6cfk:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    146 6cfk:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    147 6cfk:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    148 6cfk:2D (2.7) BS01 rna ? GO:0002181 ... P60405 29410130
    149 6cfk:2D (2.7) BS02 rna ? GO:0002181 ... P60405 29410130
    150 6cfk:2D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    151 6cfk:2D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    152 6cfk:2D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    153 6cfk:2D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    154 6cfk:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 29410130
    155 6cfk:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    156 6cfk:2E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    157 6cfk:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 29410130
    158 6cfk:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    159 6cfk:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    160 6cfk:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    161 6cfk:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 29410130
    162 6cfk:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 29410130
    163 6cfk:2G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    164 6cfk:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 29410130
    165 6cfk:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 29410130
    166 6cfk:2I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 29410130
    167 6cfk:2N (2.7) BS01 rna ? GO:0003729 ... P60488 29410130
    168 6cfk:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 29410130
    169 6cfk:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 29410130
    170 6cfk:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 29410130
    171 6cfk:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 29410130
    172 6cfk:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 29410130
    173 6cfk:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 29410130
    174 6cfk:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 29410130
    175 6cfk:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 29410130
    176 6cfk:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 29410130
    177 6cfk:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 29410130
    178 6cfk:2T (2.7) BS01 rna ? GO:0003735 ... P60490 29410130
    179 6cfk:2T (2.7) BS02 rna ? GO:0003735 ... P60490 29410130
    180 6cfk:2U (2.7) BS01 rna ? GO:0000027 ... P60491 29410130
    181 6cfk:2U (2.7) BS02 MG ? GO:0000027 ... P60491 29410130
    182 6cfk:2V (2.7) BS01 rna ? GO:0003723 ... P60492 29410130
    183 6cfk:2V (2.7) BS02 MG ? GO:0003723 ... P60492 29410130
    184 6cfk:2V (2.7) BS03 MG ? GO:0003723 ... P60492 29410130
    185 6cfk:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 29410130
    186 6cfk:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    187 6cfk:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 29410130
    188 6cfk:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 29410130
    189 6cfk:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    190 6cfk:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 29410130
    191 6cfk:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 29410130
    192 6cfk:2b (2.7) BS01 rna ? GO:0003735 ... P80371 29410130
    193 6cfk:2c (2.7) BS01 rna ? GO:0003676 ... P80372 29410130
    194 6cfk:2d (2.7) BS01 rna ? GO:0003723 ... P80373 29410130
    195 6cfk:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 29410130
    196 6cfk:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 29410130
    197 6cfk:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 29410130
    198 6cfk:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    199 6cfk:2g (2.7) BS01 rna ? GO:0000028 ... P17291 29410130
    200 6cfk:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 29410130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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