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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6c4i:0 (3.24) BS01 rna ? GO:0000027 ... P0AG51 29403017
    2 6c4i:0 (3.24) BS02 rna ? GO:0000027 ... P0AG51 29403017
    3 6c4i:1 (3.24) BS01 rna ? GO:0002181 ... P0A7M9 29403017
    4 6c4i:1 (3.24) BS02 ZN ? GO:0002181 ... P0A7M9 29403017
    5 6c4i:2 (3.24) BS01 rna ? GO:0000027 ... P0A7N4 29403017
    6 6c4i:3 (3.24) BS01 rna ? GO:0000027 ... P0A7N9 29403017
    7 6c4i:4 (3.24) BS01 rna ? GO:0002181 ... P0A7P5 29403017
    8 6c4i:5 (3.24) BS01 rna ? GO:0002181 ... P0A7Q1 29403017
    9 6c4i:6 (3.24) BS01 rna ? GO:0002181 ... P0A7Q6 29403017
    10 6c4i:6 (3.24) BS02 ZN ? GO:0002181 ... P0A7Q6 29403017
    11 6c4i:C (3.24) BS01 rna ? GO:0000027 ... P60422 29403017
    12 6c4i:C (3.24) BS02 MG ? GO:0000027 ... P60422 29403017
    13 6c4i:D (3.24) BS01 rna ? GO:0000027 ... P60438 29403017
    14 6c4i:E (3.24) BS01 rna ? GO:0001070 ... P60723 29403017
    15 6c4i:F (3.24) BS01 rna ? GO:0000027 ... P62399 29403017
    16 6c4i:F (3.24) BS02 rna ? GO:0000027 ... P62399 29403017
    17 6c4i:F (3.24) BS03 rna ? GO:0000027 ... P62399 29403017
    18 6c4i:G (3.24) BS01 rna ? GO:0000027 ... P0AG55 29403017
    19 6c4i:H (3.24) BS01 rna ? GO:0002181 ... P0A7R1 29403017
    20 6c4i:I (3.24) BS01 rna ? GO:0002181 ... P0A7J3 29403017
    21 6c4i:J (3.24) BS01 rna ? GO:0000027 ... P0A7J7 29403017
    22 6c4i:K (3.24) BS01 rna ? GO:0002181 ... P0AA10 29403017
    23 6c4i:L (3.24) BS01 rna ? GO:0002181 ... P0ADY3 29403017
    24 6c4i:L (3.24) BS02 rna ? GO:0002181 ... P0ADY3 29403017
    25 6c4i:M (3.24) BS01 rna ? GO:0002181 ... P02413 29403017
    26 6c4i:N (3.24) BS01 rna ? GO:0000027 ... P0ADY7 29403017
    27 6c4i:N (3.24) BS02 rna ? GO:0000027 ... P0ADY7 29403017
    28 6c4i:O (3.24) BS01 rna ? GO:0000027 ... P0AG44 29403017
    29 6c4i:P (3.24) BS01 rna ? GO:0002181 ... P0C018 29403017
    30 6c4i:P (3.24) BS02 rna ? GO:0002181 ... P0C018 29403017
    31 6c4i:Q (3.24) BS01 rna ? GO:0000027 ... P0A7K6 29403017
    32 6c4i:Q (3.24) BS02 rna ? GO:0000027 ... P0A7K6 29403017
    33 6c4i:R (3.24) BS01 rna ? GO:0000027 ... P0A7L3 29403017
    34 6c4i:S (3.24) BS01 rna ? GO:0002181 ... P0AG48 29403017
    35 6c4i:T (3.24) BS01 rna ? GO:0002181 ... P61175 29403017
    36 6c4i:U (3.24) BS01 rna ? GO:0000027 ... P0ADZ0 29403017
    37 6c4i:V (3.24) BS01 rna ? GO:0000027 ... P60624 29403017
    38 6c4i:W (3.24) BS01 rna ? GO:0000027 ... P68919 29403017
    39 6c4i:W (3.24) BS02 rna ? GO:0000027 ... P68919 29403017
    40 6c4i:X (3.24) BS01 rna ? GO:0000027 ... P0A7L8 29403017
    41 6c4i:X (3.24) BS02 rna ? GO:0000027 ... P0A7L8 29403017
    42 6c4i:Y (3.24) BS01 rna ? GO:0000027 ... P0A7M2 29403017
    43 6c4i:Z (3.24) BS01 rna ? GO:0000027 ... P0A7M6 29403017
    44 6c4i:b (3.24) BS01 rna ? GO:0000028 ... P0A7V0 29403017
    45 6c4i:c (3.24) BS01 rna ? GO:0000028 ... P0A7V3 29403017
    46 6c4i:d (3.24) BS01 rna ? GO:0000028 ... P0A7V8 29403017
    47 6c4i:d (3.24) BS02 MG ? GO:0000028 ... P0A7V8 29403017
    48 6c4i:e (3.24) BS01 rna ? GO:0000028 ... P0A7W1 29403017
    49 6c4i:f (3.24) BS01 rna ? GO:0002181 ... P02358 29403017
    50 6c4i:g (3.24) BS01 rna ? GO:0000028 ... P02359 29403017
    51 6c4i:g (3.24) BS02 rna ? GO:0000028 ... P02359 29403017
    52 6c4i:h (3.24) BS01 rna ? GO:0000028 ... P0A7W7 29403017
    53 6c4i:i (3.24) BS01 rna ? GO:0000049 ... P0A7X3 29403017
    54 6c4i:i (3.24) BS02 rna ? GO:0000049 ... P0A7X3 29403017
    55 6c4i:j (3.24) BS01 rna ? GO:0000049 ... P0A7R5 29403017
    56 6c4i:k (3.24) BS01 rna ? GO:0002181 ... P0A7R9 29403017
    57 6c4i:l (3.24) BS01 rna ? GO:0000049 ... P0A7S3 29403017
    58 6c4i:m (3.24) BS01 rna ? GO:0000049 ... P0A7S9 29403017
    59 6c4i:m (3.24) BS02 rna ? GO:0000049 ... P0A7S9 29403017
    60 6c4i:n (3.24) BS01 rna ? GO:0000028 ... P0AG59 29403017
    61 6c4i:o (3.24) BS01 rna ? GO:0000028 ... P0ADZ4 29403017
    62 6c4i:o (3.24) BS02 rna ? GO:0000028 ... P0ADZ4 29403017
    63 6c4i:p (3.24) BS01 rna ? GO:0000028 ... P0A7T3 29403017
    64 6c4i:q (3.24) BS01 rna ? GO:0000028 ... P0AG63 29403017
    65 6c4i:r (3.24) BS01 rna ? GO:0003735 ... P0A7T7 29403017
    66 6c4i:s (3.24) BS01 rna ? GO:0000028 ... P0A7U3 29403017
    67 6c4i:t (3.24) BS01 rna ? GO:0000028 ... P0A7U7 29403017
    68 6c4i:u (3.24) BS01 rna ? GO:0000028 ... P68679 29403017
    69 6c4i:v (3.24) BS01 rna ? GO:0003747 ... P07012 29403017
    70 6c4i:v (3.24) BS02 rna ? GO:0003747 ... P07012 29403017
    71 6c4i:v (3.24) BS03 rna ? GO:0003747 ... P07012 29403017
    72 6c4i:w (3.24) BS01 rna ? GO:0072344 ... P36675 29403017
    73 6c4i:w (3.24) BS02 rna ? GO:0072344 ... P36675 29403017
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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