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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6bu8:03 (3.5) BS01 rna ? GO:0000027 ... P0A7L0 29247757
    2 6bu8:03 (3.5) BS02 rna ? GO:0000027 ... P0A7L0 29247757
    3 6bu8:04 (3.5) BS01 rna ? GO:0000027 ... P60422 29247757
    4 6bu8:04 (3.5) BS02 rna ? GO:0000027 ... P60422 29247757
    5 6bu8:05 (3.5) BS01 rna ? GO:0000027 ... P60438 29247757
    6 6bu8:06 (3.5) BS01 rna ? GO:0001070 ... P60723 29247757
    7 6bu8:07 (3.5) BS01 rna ? GO:0000027 ... P62399 29247757
    8 6bu8:07 (3.5) BS02 rna ? GO:0000027 ... P62399 29247757
    9 6bu8:07 (3.5) BS03 rna ? GO:0000027 ... P62399 29247757
    10 6bu8:08 (3.5) BS01 rna ? GO:0000027 ... P0AG55 29247757
    11 6bu8:09 (3.5) BS01 rna ? GO:0002181 ... P0A7R1 29247757
    12 6bu8:10 (3.5) BS01 rna ? GO:0003735 ... P0A7J3 29247757
    13 6bu8:11 (3.5) BS01 rna ? GO:0000027 ... P0A7J7 29247757
    14 6bu8:12 (3.5) BS01 rna ? GO:0002181 ... P0AA10 29247757
    15 6bu8:13 (3.5) BS01 rna ? GO:0002181 ... P0ADY3 29247757
    16 6bu8:13 (3.5) BS02 rna ? GO:0002181 ... P0ADY3 29247757
    17 6bu8:14 (3.5) BS01 rna ? GO:0002181 ... P02413 29247757
    18 6bu8:15 (3.5) BS01 rna ? GO:0000027 ... P0ADY7 29247757
    19 6bu8:15 (3.5) BS02 rna ? GO:0000027 ... P0ADY7 29247757
    20 6bu8:15 (3.5) BS03 rna ? GO:0000027 ... P0ADY7 29247757
    21 6bu8:16 (3.5) BS01 rna ? GO:0000027 ... P0AG44 29247757
    22 6bu8:17 (3.5) BS01 rna ? GO:0002181 ... P0C018 29247757
    23 6bu8:17 (3.5) BS02 rna ? GO:0002181 ... P0C018 29247757
    24 6bu8:18 (3.5) BS01 rna ? GO:0000027 ... P0A7K6 29247757
    25 6bu8:18 (3.5) BS02 rna ? GO:0000027 ... P0A7K6 29247757
    26 6bu8:19 (3.5) BS01 rna ? GO:0000027 ... P0A7L3 29247757
    27 6bu8:20 (3.5) BS01 rna ? GO:0002181 ... P0AG48 29247757
    28 6bu8:21 (3.5) BS01 rna ? GO:0002181 ... P61175 29247757
    29 6bu8:22 (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 29247757
    30 6bu8:23 (3.5) BS01 rna ? GO:0000027 ... P60624 29247757
    31 6bu8:24 (3.5) BS01 rna ? GO:0000027 ... P68919 29247757
    32 6bu8:25 (3.5) BS01 rna ? GO:0003735 ... P0A7L8 29247757
    33 6bu8:25 (3.5) BS02 rna ? GO:0003735 ... P0A7L8 29247757
    34 6bu8:26 (3.5) BS01 rna ? GO:0000027 ... P0A7M2 29247757
    35 6bu8:27 (3.5) BS01 rna ? GO:0000027 ... P0A7M6 29247757
    36 6bu8:28 (3.5) BS01 rna ? GO:0000027 ... P0AG51 29247757
    37 6bu8:28 (3.5) BS02 rna ? GO:0000027 ... P0AG51 29247757
    38 6bu8:29 (3.5) BS01 rna ? GO:0002181 ... P0A7M9 29247757
    39 6bu8:30 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 29247757
    40 6bu8:31 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 29247757
    41 6bu8:31 (3.5) BS02 rna ? GO:0000027 ... P0A7N9 29247757
    42 6bu8:32 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 29247757
    43 6bu8:33 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 29247757
    44 6bu8:34 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 29247757
    45 6bu8:B (3.5) BS01 rna ? GO:0000028 ... P0A7V0 29247757
    46 6bu8:C (3.5) BS01 rna ? GO:0003676 ... P0A7V3 29247757
    47 6bu8:D (3.5) BS01 rna ? GO:0000028 ... P0A7V8 29247757
    48 6bu8:E (3.5) BS01 rna ? GO:0000028 ... P0A7W1 29247757
    49 6bu8:F (3.5) BS01 rna ? GO:0002181 ... P02358 29247757
    50 6bu8:G (3.5) BS01 rna ? GO:0003723 ... P02359 29247757
    51 6bu8:G (3.5) BS02 rna ? GO:0003723 ... P02359 29247757
    52 6bu8:H (3.5) BS01 rna ? GO:0000028 ... P0A7W7 29247757
    53 6bu8:I (3.5) BS01 rna ? GO:0000049 ... P0A7X3 29247757
    54 6bu8:I (3.5) BS02 rna ? GO:0000049 ... P0A7X3 29247757
    55 6bu8:J (3.5) BS01 rna ? GO:0000049 ... P0A7R5 29247757
    56 6bu8:K (3.5) BS01 rna ? GO:0002181 ... P0A7R9 29247757
    57 6bu8:L (3.5) BS01 rna ? GO:0000049 ... P0A7S3 29247757
    58 6bu8:M (3.5) BS01 rna ? GO:0000049 ... P0A7S9 29247757
    59 6bu8:M (3.5) BS02 rna ? GO:0000049 ... P0A7S9 29247757
    60 6bu8:N (3.5) BS01 rna ? GO:0000028 ... P0AG59 29247757
    61 6bu8:O (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 29247757
    62 6bu8:O (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 29247757
    63 6bu8:P (3.5) BS01 rna ? GO:0000028 ... P0A7T3 29247757
    64 6bu8:Q (3.5) BS01 rna ? GO:0000028 ... P0AG63 29247757
    65 6bu8:R (3.5) BS01 rna ? GO:0003735 ... P0A7T7 29247757
    66 6bu8:S (3.5) BS01 rna ? GO:0003723 ... P0A7U3 29247757
    67 6bu8:T (3.5) BS01 rna ? GO:0000028 ... P0A7U7 29247757
    68 6bu8:U (3.5) BS01 rna ? GO:0000028 ... P68679 29247757
    69 6bu8:U (3.5) BS02 rna ? GO:0000028 ... P68679 29247757
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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