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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ylz:A (3.6) BS01 rna ? GO:0000244 ... P33334 29153833
    2 5ylz:A (3.6) BS02 rna ? GO:0000244 ... P33334 29153833
    3 5ylz:A (3.6) BS03 rna ? GO:0000244 ... P33334 29153833
    4 5ylz:A (3.6) BS04 rna ? GO:0000244 ... P33334 29153833
    5 5ylz:A (3.6) BS05 peptide ? GO:0000244 ... P33334 29153833
    6 5ylz:A (3.6) BS06 IHP ? GO:0000244 ... P33334 29153833
    7 5ylz:C (3.6) BS01 rna ? GO:0000244 ... P36048 29153833
    8 5ylz:C (3.6) BS02 GTP ? GO:0000244 ... P36048 29153833
    9 5ylz:C (3.6) BS03 MG ? GO:0000244 ... P36048 29153833
    10 5ylz:I (3.6) BS01 rna ? GO:0000245 ... Q12309 29153833
    11 5ylz:J (3.6) BS01 rna ? GO:0000350 ... Q03654 29153833
    12 5ylz:J (3.6) BS02 rna ? GO:0000350 ... Q03654 29153833
    13 5ylz:K (3.6) BS01 rna ? GO:0000384 ... P53277 29153833
    14 5ylz:K (3.6) BS02 rna ? GO:0000384 ... P53277 29153833
    15 5ylz:L (3.6) BS01 rna ? GO:0000282 ... P25337 29153833
    16 5ylz:L (3.6) BS02 rna ? GO:0000282 ... P25337 29153833
    17 5ylz:L (3.6) BS03 ZN ? GO:0000282 ... P25337 29153833
    18 5ylz:L (3.6) BS04 ZN ? GO:0000282 ... P25337 29153833
    19 5ylz:L (3.6) BS05 ZN ? GO:0000282 ... P25337 29153833
    20 5ylz:M (3.6) BS01 rna ? GO:0000398 ... P38241 29153833
    21 5ylz:M (3.6) BS02 ZN ? GO:0000398 ... P38241 29153833
    22 5ylz:M (3.6) BS03 ZN ? GO:0000398 ... P38241 29153833
    23 5ylz:N (3.6) BS01 rna ? GO:0000387 ... Q12046 29153833
    24 5ylz:N (3.6) BS02 rna ? GO:0000387 ... Q12046 29153833
    25 5ylz:N (3.6) BS03 ZN ? GO:0000387 ... Q12046 29153833
    26 5ylz:P (3.6) BS01 rna ? GO:0000398 ... Q03772 29153833
    27 5ylz:P (3.6) BS02 rna ? GO:0000398 ... Q03772 29153833
    28 5ylz:P (3.6) BS03 rna ? GO:0000398 ... Q03772 29153833
    29 5ylz:Q (3.6) BS01 rna ? GO:0000350 ... P28004 29153833
    30 5ylz:Q (3.6) BS02 rna ? GO:0000350 ... P28004 29153833
    31 5ylz:S (3.6) BS01 peptide ? GO:0000398 ... P53333 29153833
    32 5ylz:T (3.6) BS01 rna ? GO:0000348 ... P40968 29153833
    33 5ylz:T (3.6) BS02 rna ? GO:0000348 ... P40968 29153833
    34 5ylz:a (3.6) BS01 rna ? GO:0000243 ... P40018 29153833
    35 5ylz:b (3.6) BS01 rna ? GO:0000243 ... Q12330 29153833
    36 5ylz:c (3.6) BS01 rna ? GO:0000243 ... P54999 29153833
    37 5ylz:d (3.6) BS01 rna ? GO:0000243 ... P40204 29153833
    38 5ylz:e (3.6) BS01 rna ? GO:0000243 ... P43321 29153833
    39 5ylz:f (3.6) BS01 rna ? GO:0000243 ... Q02260 29153833
    40 5ylz:g (3.6) BS01 rna ? GO:0000243 ... Q06217 29153833
    41 5ylz:h (3.6) BS01 rna ? GO:0000243 ... P40018 29153833
    42 5ylz:i (3.6) BS01 rna ? GO:0000243 ... Q12330 29153833
    43 5ylz:j (3.6) BS01 rna ? GO:0000243 ... P54999 29153833
    44 5ylz:k (3.6) BS01 rna ? GO:0000243 ... P40204 29153833
    45 5ylz:l (3.6) BS01 rna ? GO:0000243 ... P43321 29153833
    46 5ylz:m (3.6) BS01 rna ? GO:0000243 ... Q02260 29153833
    47 5ylz:n (3.6) BS01 rna ? GO:0000243 ... Q06217 29153833
    48 5ylz:p (3.6) BS01 rna ? GO:0000398 ... P40567 29153833
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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