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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xxw:A (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    2 5xxw:B (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    3 5xxw:B (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    4 5xxw:C (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    5 5xxw:D (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    6 5xxw:D (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    7 5xxw:E (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    8 5xxw:F (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    9 5xxw:F (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    10 5xxw:G (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    11 5xxw:H (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    12 5xxw:H (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    13 5xxw:I (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    14 5xxw:J (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    15 5xxw:J (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    16 5xxw:K (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    17 5xxw:L (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    18 5xxw:L (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    19 5xxw:M (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    20 5xxw:N (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    21 5xxw:N (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    22 5xxw:O (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    23 5xxw:P (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    24 5xxw:P (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    25 5xxw:Q (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    26 5xxw:R (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    27 5xxw:R (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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