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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xti:2 (17.4) BS01 ZN ? GO:0005740 ... P00428 28844695
    2 5xti:A (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3 5xti:A (17.4) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    4 5xti:AC (17.4) BS01 FES 7.1.1.8 GO:0008121 ... P47985 28844695
    5 5xti:AD (17.4) BS01 PLX ? GO:0005515 ... Q9UDW1 28844695
    6 5xti:AH (17.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    7 5xti:AJ (17.4) BS01 HEM ? GO:0001666 ... P00156 28844695
    8 5xti:AJ (17.4) BS02 HEM ? GO:0001666 ... P00156 28844695
    9 5xti:AP (17.4) BS01 FES 7.1.1.8 GO:0008121 ... P47985 28844695
    10 5xti:AP (17.4) BS02 PLX 7.1.1.8 GO:0008121 ... P47985 28844695
    11 5xti:AQ (17.4) BS01 PLX ? GO:0005515 ... Q9UDW1 28844695
    12 5xti:AU (17.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    13 5xti:AV (17.4) BS01 HEM ? GO:0001666 ... P00156 28844695
    14 5xti:AV (17.4) BS02 HEM ? GO:0001666 ... P00156 28844695
    15 5xti:B (17.4) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    16 5xti:B (17.4) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    17 5xti:B (17.4) BS03 PLX 7.1.1.2 GO:0016020 ... O00217 28844695
    18 5xti:B2 (17.4) BS01 ZN ? GO:0005740 ... P00428 28844695
    19 5xti:BA (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    20 5xti:BA (17.4) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    21 5xti:BB (17.4) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    22 5xti:BB (17.4) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    23 5xti:BB (17.4) BS03 PLX 7.1.1.2 GO:0016020 ... O00217 28844695
    24 5xti:BC (17.4) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    25 5xti:BE (17.4) BS01 8Q1 ? GO:0045271 ... P56556 28844695
    26 5xti:BJ (17.4) BS01 NDP ? N/A Q16795 28844695
    27 5xti:BM (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    28 5xti:BM (17.4) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    29 5xti:BM (17.4) BS03 FES 7.1.1.2 GO:0005515 ... P28331 28844695
    30 5xti:BO (17.4) BS01 FES 7.1.1.2 GO:0016491 ... P19404 28844695
    31 5xti:BU (17.4) BS01 PLX ? GO:0005515 ... O95167 28844695
    32 5xti:Ba (17.4) BS01 PLX ? N/A O43674 28844695
    33 5xti:Bb (17.4) BS01 PLX ? GO:0005515 ... O95139 28844695
    34 5xti:Be (17.4) BS01 PLX ? N/A Q9NX14 28844695
    35 5xti:Bf (17.4) BS01 PLX ? GO:0005739 ... O43677 28844695
    36 5xti:Bg (17.4) BS01 PLX ? GO:0005515 ... O95298 28844695
    37 5xti:Bg (17.4) BS02 PLX ? GO:0005515 ... O95298 28844695
    38 5xti:Bg (17.4) BS03 PLX ? GO:0005515 ... O95298 28844695
    39 5xti:Bh (17.4) BS01 PLX ? GO:0005515 ... O43920 28844695
    40 5xti:Bi (17.4) BS01 PLX 7.1.1.2 GO:0001666 ... P03891 28844695
    41 5xti:Bj (17.4) BS01 PLX 7.1.1.2 GO:0005739 ... B9EE38 28844695
    42 5xti:Bo (17.4) BS01 PLX ? GO:0005654 ... O95168 28844695
    43 5xti:Bp (17.4) BS01 8Q1 ? GO:0005515 ... Q9Y6M9 28844695
    44 5xti:Br (17.4) BS01 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    45 5xti:Br (17.4) BS02 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    46 5xti:Bs (17.4) BS01 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    47 5xti:Bs (17.4) BS02 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    48 5xti:Bx (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    49 5xti:Bx (17.4) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    50 5xti:Bx (17.4) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    51 5xti:Bx (17.4) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    52 5xti:By (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    53 5xti:By (17.4) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    54 5xti:C (17.4) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    55 5xti:E (17.4) BS01 8Q1 ? GO:0045271 ... P56556 28844695
    56 5xti:J (17.4) BS01 NDP ? N/A Q16795 28844695
    57 5xti:M (17.4) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    58 5xti:M (17.4) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    59 5xti:M (17.4) BS03 FES 7.1.1.2 GO:0005515 ... P28331 28844695
    60 5xti:O (17.4) BS01 FES 7.1.1.2 GO:0016491 ... P19404 28844695
    61 5xti:U (17.4) BS01 PLX ? GO:0005515 ... O95167 28844695
    62 5xti:a (17.4) BS01 PLX ? N/A O43674 28844695
    63 5xti:b (17.4) BS01 PLX ? GO:0005515 ... O95139 28844695
    64 5xti:e (17.4) BS01 PLX ? N/A Q9NX14 28844695
    65 5xti:f (17.4) BS01 PLX ? GO:0005739 ... O43677 28844695
    66 5xti:g (17.4) BS01 PLX ? GO:0005515 ... O95298 28844695
    67 5xti:g (17.4) BS02 PLX ? GO:0005515 ... O95298 28844695
    68 5xti:g (17.4) BS03 PLX ? GO:0005515 ... O95298 28844695
    69 5xti:h (17.4) BS01 PLX ? GO:0005515 ... O43920 28844695
    70 5xti:i (17.4) BS01 PLX 7.1.1.2 GO:0001666 ... P03891 28844695
    71 5xti:j (17.4) BS01 PLX 7.1.1.2 GO:0005739 ... B9EE38 28844695
    72 5xti:o (17.4) BS01 PLX ? GO:0005654 ... O95168 28844695
    73 5xti:p (17.4) BS01 8Q1 ? GO:0005515 ... Q9Y6M9 28844695
    74 5xti:r (17.4) BS01 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    75 5xti:r (17.4) BS02 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    76 5xti:s (17.4) BS01 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    77 5xti:s (17.4) BS02 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    78 5xti:x (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    79 5xti:x (17.4) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    80 5xti:x (17.4) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    81 5xti:x (17.4) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    82 5xti:y (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    83 5xti:y (17.4) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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