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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xjc:A (3.6) BS01 rna ? GO:0000244 ... Q6P2Q9 28502770
    2 5xjc:A (3.6) BS02 rna ? GO:0000244 ... Q6P2Q9 28502770
    3 5xjc:A (3.6) BS03 rna ? GO:0000244 ... Q6P2Q9 28502770
    4 5xjc:A (3.6) BS04 rna ? GO:0000244 ... Q6P2Q9 28502770
    5 5xjc:A (3.6) BS05 peptide ? GO:0000244 ... Q6P2Q9 28502770
    6 5xjc:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 28502770
    7 5xjc:C (3.6) BS01 rna ? GO:0000398 ... Q15029 28502770
    8 5xjc:C (3.6) BS02 GTP ? GO:0000398 ... Q15029 28502770
    9 5xjc:D (3.6) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    10 5xjc:D (3.6) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    11 5xjc:J (3.6) BS01 rna ? GO:0000245 ... Q9BZJ0 28502770
    12 5xjc:L (3.6) BS01 rna ? GO:0000077 ... Q99459 28502770
    13 5xjc:M (3.6) BS01 rna ? GO:0000398 ... O95926 28502770
    14 5xjc:M (3.6) BS02 rna ? GO:0000398 ... O95926 28502770
    15 5xjc:N (3.6) BS01 rna ? GO:0000398 ... P41223 28502770
    16 5xjc:N (3.6) BS02 ZN ? GO:0000398 ... P41223 28502770
    17 5xjc:N (3.6) BS03 ZN ? GO:0000398 ... P41223 28502770
    18 5xjc:N (3.6) BS04 ZN ? GO:0000398 ... P41223 28502770
    19 5xjc:O (3.6) BS01 rna ? GO:0000398 ... Q9NW64 28502770
    20 5xjc:O (3.6) BS02 rna ? GO:0000398 ... Q9NW64 28502770
    21 5xjc:O (3.6) BS03 ZN ? GO:0000398 ... Q9NW64 28502770
    22 5xjc:O (3.6) BS04 ZN ? GO:0000398 ... Q9NW64 28502770
    23 5xjc:P (3.6) BS01 rna ? GO:0000398 ... Q9P013 28502770
    24 5xjc:P (3.6) BS02 rna ? GO:0000398 ... Q9P013 28502770
    25 5xjc:P (3.6) BS03 rna ? GO:0000398 ... Q9P013 28502770
    26 5xjc:Q (3.6) BS01 rna 3.6.4.13 GO:0000398 ... O60306 28502770
    27 5xjc:Q (3.6) BS02 ATP 3.6.4.13 GO:0000398 ... O60306 28502770
    28 5xjc:R (3.6) BS01 rna ? GO:0000122 ... Q13573 28502770
    29 5xjc:R (3.6) BS02 rna ? GO:0000122 ... Q13573 28502770
    30 5xjc:T (3.6) BS01 rna ? GO:0000398 ... O43660 28502770
    31 5xjc:V (3.6) BS01 peptide ? GO:0000398 ... Q9HCG8 28502770
    32 5xjc:W (3.6) BS01 rna ? GO:0000398 ... O60508 28502770
    33 5xjc:W (3.6) BS02 rna ? GO:0000398 ... O60508 28502770
    34 5xjc:W (3.6) BS03 rna ? GO:0000398 ... O60508 28502770
    35 5xjc:X (3.6) BS01 rna ? GO:0003014 ... Q9H875 28502770
    36 5xjc:X (3.6) BS02 rna ? GO:0003014 ... Q9H875 28502770
    37 5xjc:Z (3.6) BS01 IHP ? GO:0000375 ... O95391 28502770
    38 5xjc:Z (3.6) BS02 ZN ? GO:0000375 ... O95391 28502770
    39 5xjc:a (3.6) BS01 rna ? GO:0000243 ... P62318 28502770
    40 5xjc:b (3.6) BS01 rna ? GO:0000387 ... P14678 28502770
    41 5xjc:c (3.6) BS01 rna ? GO:0000243 ... P62314 28502770
    42 5xjc:d (3.6) BS01 rna ? GO:0000245 ... P62316 28502770
    43 5xjc:e (3.6) BS01 rna ? GO:0000245 ... P62304 28502770
    44 5xjc:f (3.6) BS01 rna ? GO:0000387 ... P62306 28502770
    45 5xjc:g (3.6) BS01 rna ? GO:0000245 ... P62308 28502770
    46 5xjc:h (3.6) BS01 rna ? GO:0000243 ... P62318 28502770
    47 5xjc:i (3.6) BS01 rna ? GO:0000387 ... P14678 28502770
    48 5xjc:j (3.6) BS01 rna ? GO:0000243 ... P62314 28502770
    49 5xjc:k (3.6) BS01 rna ? GO:0000245 ... P62316 28502770
    50 5xjc:l (3.6) BS01 rna ? GO:0000245 ... P62304 28502770
    51 5xjc:m (3.6) BS01 rna ? GO:0000387 ... P62306 28502770
    52 5xjc:n (3.6) BS01 rna ? GO:0000245 ... P62308 28502770
    53 5xjc:p (3.6) BS01 rna ? GO:0000398 ... P08579 28502770
    54 5xjc:u (3.6) BS01 rna 3.6.4.13 GO:0000184 ... P38919 28502770
    55 5xjc:u (3.6) BS02 peptide 3.6.4.13 GO:0000184 ... P38919 28502770
    56 5xjc:u (3.6) BS03 ATP 3.6.4.13 GO:0000184 ... P38919 28502770
    57 5xjc:v (3.6) BS01 peptide ? GO:0000184 ... Q96A72 28502770
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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