Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5x8p:0 (3.4) BS01 rna ? GO:0003735 ... P82249 28582576
    2 5x8p:0 (3.4) BS02 rna ? GO:0003735 ... P82249 28582576
    3 5x8p:1 (3.4) BS01 rna ? GO:0003735 ... P28804 28582576
    4 5x8p:1 (3.4) BS02 rna ? GO:0003735 ... P28804 28582576
    5 5x8p:2 (3.4) BS01 rna ? GO:0003735 ... P28805 28582576
    6 5x8p:3 (3.4) BS01 rna ? GO:0003735 ... P82244 28582576
    7 5x8p:4 (3.4) BS01 rna ? GO:0003735 ... P23326 28582576
    8 5x8p:5 (3.4) BS01 rna ? GO:0003735 ... P12230 28582576
    9 5x8p:6 (3.4) BS01 rna ? GO:0005840 ... P27684 28582576
    10 5x8p:7 (3.4) BS01 rna ? GO:0003723 ... P82411 28582576
    11 5x8p:7 (3.4) BS02 rna ? GO:0003723 ... P82411 28582576
    12 5x8p:C (3.4) BS01 rna ? GO:0002181 ... P06509 28582576
    13 5x8p:D (3.4) BS01 rna ? GO:0003735 ... P82191 28582576
    14 5x8p:D (3.4) BS02 rna ? GO:0003735 ... P82191 28582576
    15 5x8p:E (3.4) BS01 rna ? GO:0003735 ... O49937 28582576
    16 5x8p:F (3.4) BS01 rna ? GO:0003735 ... P82192 28582576
    17 5x8p:F (3.4) BS02 rna ? GO:0003735 ... P82192 28582576
    18 5x8p:G (3.4) BS01 rna ? GO:0003735 ... P82193 28582576
    19 5x8p:H (3.4) BS01 rna ? GO:0003735 ... P82180 28582576
    20 5x8p:K (3.4) BS01 rna ? GO:0003735 ... P12629 28582576
    21 5x8p:K (3.4) BS02 rna ? GO:0003735 ... P12629 28582576
    22 5x8p:L (3.4) BS01 rna ? GO:0003735 ... P09596 28582576
    23 5x8p:L (3.4) BS02 rna ? GO:0003735 ... P09596 28582576
    24 5x8p:M (3.4) BS01 rna ? GO:0003735 ... P22798 28582576
    25 5x8p:N (3.4) BS01 rna ? GO:0003735 ... P17353 28582576
    26 5x8p:N (3.4) BS02 rna ? GO:0003735 ... P17353 28582576
    27 5x8p:O (3.4) BS01 rna ? GO:0003735 ... P82194 28582576
    28 5x8p:O (3.4) BS02 rna ? GO:0003735 ... P82194 28582576
    29 5x8p:P (3.4) BS01 rna ? GO:0003735 ... P82195 28582576
    30 5x8p:P (3.4) BS02 rna ? GO:0003735 ... P82195 28582576
    31 5x8p:Q (3.4) BS01 rna ? GO:0003735 ... P82413 28582576
    32 5x8p:Q (3.4) BS02 rna ? GO:0003735 ... P82413 28582576
    33 5x8p:Q (3.4) BS03 rna ? GO:0003735 ... P82413 28582576
    34 5x8p:R (3.4) BS01 rna ? GO:0000027 ... P28803 28582576
    35 5x8p:S (3.4) BS01 rna ? GO:0003723 ... P24613 28582576
    36 5x8p:T (3.4) BS01 rna ? GO:0003735 ... P09594 28582576
    37 5x8p:U (3.4) BS01 rna ? GO:0003735 ... Q9LWB5 28582576
    38 5x8p:V (3.4) BS01 rna ? GO:0003723 ... P27683 28582576
    39 5x8p:X (3.4) BS01 rna ? GO:0003735 ... P82190 28582576
    40 5x8p:X (3.4) BS02 rna ? GO:0003735 ... P82190 28582576
    41 5x8p:Y (3.4) BS01 rna ? GO:0003735 ... P82245 28582576
    42 5x8p:Z (3.4) BS01 rna ? GO:0003735 ... P82248 28582576
    43 5x8p:b (3.4) BS01 rna ? GO:0003735 ... P08242 28582576
    44 5x8p:c (3.4) BS01 rna ? GO:0003723 ... P09595 28582576
    45 5x8p:d (3.4) BS01 rna ? GO:0003723 ... P13788 28582576
    46 5x8p:e (3.4) BS01 rna ? GO:0003723 ... Q9ST69 28582576
    47 5x8p:f (3.4) BS01 rna ? GO:0003735 ... P82403 28582576
    48 5x8p:g (3.4) BS01 rna ? GO:0000028 ... P82129 28582576
    49 5x8p:h (3.4) BS01 rna ? GO:0003735 ... P09597 28582576
    50 5x8p:i (3.4) BS01 rna ? GO:0003735 ... P82278 28582576
    51 5x8p:j (3.4) BS01 rna ? GO:0003723 ... P82162 28582576
    52 5x8p:k (3.4) BS01 rna ? GO:0003735 ... P06506 28582576
    53 5x8p:l (3.4) BS01 rna ? GO:0003735 ... P62128 28582576
    54 5x8p:m (3.4) BS01 rna ? GO:0003676 ... P82163 28582576
    55 5x8p:m (3.4) BS02 rna ? GO:0003676 ... P82163 28582576
    56 5x8p:n (3.4) BS01 rna ? GO:0003735 ... P06507 28582576
    57 5x8p:o (3.4) BS01 rna ? GO:0003735 ... Q9M3I4 28582576
    58 5x8p:o (3.4) BS02 rna ? GO:0003735 ... Q9M3I4 28582576
    59 5x8p:p (3.4) BS01 rna ? GO:0003735 ... P28807 28582576
    60 5x8p:q (3.4) BS01 rna ? GO:0003735 ... P82137 28582576
    61 5x8p:r (3.4) BS01 rna ? GO:0003735 ... Q9M3K7 28582576
    62 5x8p:s (3.4) BS01 rna ? GO:0000028 ... P06508 28582576
    63 5x8p:s (3.4) BS02 rna ? GO:0000028 ... P06508 28582576
    64 5x8p:t (3.4) BS01 rna N/A GO:0003723 ... N/A 28582576
    65 5x8p:u (3.4) BS01 rna ? GO:0003735 ... P82024 28582576
    66 5x8p:v (3.4) BS01 rna ? GO:0003676 ... P82277 28582576
    67 5x8p:x (3.4) BS01 rna ? GO:0005840 ... P47910 28582576
    68 5x8p:y (3.4) BS01 rna ? GO:0044238 ... P19954 28582576
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417