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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5wlc:L4 (3.8) BS01 rna ? GO:0002181 ... P0CX35 28945246
    2 5wlc:L5 (3.8) BS01 rna ? GO:0000028 ... A0A1L4AA68 28945246
    3 5wlc:L6 (3.8) BS01 rna ? GO:0000462 ... P0CX37 28945246
    4 5wlc:L8 (3.8) BS01 rna ? GO:0000462 ... P0CX39 28945246
    5 5wlc:L9 (3.8) BS01 rna ? GO:0000462 ... O13516 28945246
    6 5wlc:LC (3.8) BS01 rna ? GO:0000462 ... P0CX51 28945246
    7 5wlc:LC (3.8) BS02 rna ? GO:0000462 ... P0CX51 28945246
    8 5wlc:LD (3.8) BS01 rna ? GO:0000028 ... P0CX47 28945246
    9 5wlc:LF (3.8) BS01 rna ? GO:0000462 ... P0CX31 28945246
    10 5wlc:LG (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 28945246
    11 5wlc:LH (3.8) BS01 rna ? GO:0000462 ... Q02931 28945246
    12 5wlc:LH (3.8) BS02 rna ? GO:0000462 ... Q02931 28945246
    13 5wlc:LJ (3.8) BS01 rna ? GO:0000462 ... Q04305 28945246
    14 5wlc:LJ (3.8) BS02 rna ? GO:0000462 ... Q04305 28945246
    15 5wlc:LL (3.8) BS01 rna ? GO:0000462 ... Q04177 28945246
    16 5wlc:LM (3.8) BS01 rna ? GO:0000447 ... P42945 28945246
    17 5wlc:LN (3.8) BS01 rna ? GO:0000462 ... Q06679 28945246
    18 5wlc:LO (3.8) BS01 rna ? GO:0000028 ... P25635 28945246
    19 5wlc:LO (3.8) BS02 rna ? GO:0000028 ... P25635 28945246
    20 5wlc:LO (3.8) BS03 rna ? GO:0000028 ... P25635 28945246
    21 5wlc:LP (3.8) BS01 rna ? GO:0000462 ... Q02354 28945246
    22 5wlc:LQ (3.8) BS01 rna ? GO:0000447 ... Q12220 28945246
    23 5wlc:LR (3.8) BS01 rna ? GO:0006364 ... Q05946 28945246
    24 5wlc:LS (3.8) BS01 rna ? GO:0000292 ... P40362 28945246
    25 5wlc:LT (3.8) BS01 rna ? GO:0003674 ... Q06078 28945246
    26 5wlc:LT (3.8) BS02 rna ? GO:0003674 ... Q06078 28945246
    27 5wlc:LU (3.8) BS01 rna ? GO:0000462 ... P33750 28945246
    28 5wlc:LU (3.8) BS02 rna ? GO:0000462 ... P33750 28945246
    29 5wlc:LU (3.8) BS03 rna ? GO:0000462 ... P33750 28945246
    30 5wlc:LV (3.8) BS01 rna ? GO:0000462 ... P48234 28945246
    31 5wlc:LW (3.8) BS01 rna ? GO:0000447 ... P40055 28945246
    32 5wlc:LW (3.8) BS02 rna ? GO:0000447 ... P40055 28945246
    33 5wlc:LW (3.8) BS03 rna ? GO:0000447 ... P40055 28945246
    34 5wlc:LX (3.8) BS01 rna 2.3.1.- GO:0008080 ... P53914 28945246
    35 5wlc:LZ (3.8) BS01 rna ? GO:0003723 ... P32899 28945246
    36 5wlc:LZ (3.8) BS02 rna ? GO:0003723 ... P32899 28945246
    37 5wlc:NA (3.8) BS01 rna ? GO:0000447 ... P47083 28945246
    38 5wlc:NB (3.8) BS01 rna ? GO:0000447 ... Q12136 28945246
    39 5wlc:NC (3.8) BS01 rna ? GO:0000447 ... P40079 28945246
    40 5wlc:ND (3.8) BS01 rna ? GO:0000447 ... Q08492 28945246
    41 5wlc:NE (3.8) BS01 rna ? GO:0000462 ... P40546 28945246
    42 5wlc:NE (3.8) BS02 rna ? GO:0000462 ... P40546 28945246
    43 5wlc:NE (3.8) BS03 rna ? GO:0000462 ... P40546 28945246
    44 5wlc:NF (3.8) BS01 rna ? GO:0000462 ... P05756 28945246
    45 5wlc:NG (3.8) BS01 rna ? GO:0000028 ... P06367 28945246
    46 5wlc:NJ (3.8) BS01 rna ? GO:0000447 ... Q05022 28945246
    47 5wlc:SA (3.8) BS01 rna ? GO:0000154 ... Q12460 28945246
    48 5wlc:SA (3.8) BS02 rna ? GO:0000154 ... Q12460 28945246
    49 5wlc:SB (3.8) BS01 rna ? GO:0030515 ... Q12499 28945246
    50 5wlc:SB (3.8) BS02 rna ? GO:0030515 ... Q12499 28945246
    51 5wlc:SD (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 28945246
    52 5wlc:SE (3.8) BS01 rna ? GO:0000245 ... P39990 28945246
    53 5wlc:SF (3.8) BS01 rna ? GO:0000245 ... P39990 28945246
    54 5wlc:SG (3.8) BS01 rna ? GO:0000447 ... Q06506 28945246
    55 5wlc:SH (3.8) BS01 rna ? GO:0000447 ... Q08096 28945246
    56 5wlc:SI (3.8) BS01 rna ? GO:0005524 ... Q08965 28945246
    57 5wlc:SI (3.8) BS02 rna ? GO:0005524 ... Q08965 28945246
    58 5wlc:SI (3.8) BS03 rna ? GO:0005524 ... Q08965 28945246
    59 5wlc:SJ (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28945246
    60 5wlc:SK (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28945246
    61 5wlc:SL (3.8) BS01 rna ? GO:0000447 ... Q05498 28945246
    62 5wlc:SL (3.8) BS02 rna ? GO:0000447 ... Q05498 28945246
    63 5wlc:SL (3.8) BS03 ZN ? GO:0000447 ... Q05498 28945246
    64 5wlc:SM (3.8) BS01 rna ? GO:0005515 ... P53941 28945246
    65 5wlc:SM (3.8) BS02 rna ? GO:0005515 ... P53941 28945246
    66 5wlc:SN (3.8) BS01 rna ? GO:0000462 ... P36144 28945246
    67 5wlc:SN (3.8) BS02 rna ? GO:0000462 ... P36144 28945246
    68 5wlc:SO (3.8) BS01 rna ? GO:0000056 ... Q99216 28945246
    69 5wlc:SP (3.8) BS01 rna N/A N/A N/A 28945246
    70 5wlc:SQ (3.8) BS01 rna ? GO:0000447 ... Q12035 28945246
    71 5wlc:SQ (3.8) BS02 rna ? GO:0000447 ... Q12035 28945246
    72 5wlc:SR (3.8) BS01 rna ? GO:0003735 ... P0CY39 28945246
    73 5wlc:SS (3.8) BS01 rna ? GO:0000447 ... Q04500 28945246
    74 5wlc:SS (3.8) BS02 rna ? GO:0000447 ... Q04500 28945246
    75 5wlc:ST (3.8) BS01 rna ? GO:0000028 ... Q99207 28945246
    76 5wlc:ST (3.8) BS02 rna ? GO:0000028 ... Q99207 28945246
    77 5wlc:SU (3.8) BS01 rna ? GO:0042254 ... Q06512 28945246
    78 5wlc:SV (3.8) BS01 rna ? GO:0005634 ... B5VKI1
    E9P9B2    		 28945246
    79 5wlc:SX (3.8) BS01 rna N/A N/A N/A 28945246
    80 5wlc:SY (3.8) BS01 rna ? GO:0005634 ... B5VM59 28945246
    81 5wlc:SY (3.8) BS02 rna ? GO:0005634 ... B5VM59 28945246
    82 5wlc:SY (3.8) BS03 rna ? GO:0005634 ... B5VM59 28945246
    83 5wlc:SZ (3.8) BS01 rna ? GO:0000447 ... P38333 28945246
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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