Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5wf0:0 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    2 5wf0:1 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    3 5wf0:2 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    4 5wf0:3 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    5 5wf0:4 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    6 5wf0:5 (3.6) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    7 5wf0:6 (3.6) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    8 5wf0:C (3.6) BS01 rna ? GO:0000027 ... P60422 29733411
    9 5wf0:D (3.6) BS01 rna ? GO:0000027 ... P60438 29733411
    10 5wf0:D (3.6) BS02 MG ? GO:0000027 ... P60438 29733411
    11 5wf0:E (3.6) BS01 rna ? GO:0001070 ... P60723 29733411
    12 5wf0:F (3.6) BS01 rna ? GO:0000027 ... P62399 29733411
    13 5wf0:F (3.6) BS02 rna ? GO:0000027 ... P62399 29733411
    14 5wf0:F (3.6) BS03 rna ? GO:0000027 ... P62399 29733411
    15 5wf0:G (3.6) BS01 rna ? GO:0000027 ... P0AG55 29733411
    16 5wf0:H (3.6) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    17 5wf0:I (3.6) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    18 5wf0:I (3.6) BS02 rna ? GO:0000027 ... P0A7J7 29733411
    19 5wf0:J (3.6) BS01 rna ? GO:0002181 ... P0AA10 29733411
    20 5wf0:K (3.6) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    21 5wf0:K (3.6) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    22 5wf0:L (3.6) BS01 rna ? GO:0002181 ... P02413 29733411
    23 5wf0:M (3.6) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    24 5wf0:M (3.6) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    25 5wf0:N (3.6) BS01 rna ? GO:0000027 ... P0AG44 29733411
    26 5wf0:O (3.6) BS01 rna ? GO:0002181 ... P0C018 29733411
    27 5wf0:O (3.6) BS02 rna ? GO:0002181 ... P0C018 29733411
    28 5wf0:P (3.6) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    29 5wf0:P (3.6) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    30 5wf0:Q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    31 5wf0:R (3.6) BS01 rna ? GO:0002181 ... P0AG48 29733411
    32 5wf0:S (3.6) BS01 rna ? GO:0002181 ... P61175 29733411
    33 5wf0:T (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    34 5wf0:U (3.6) BS01 rna ? GO:0000027 ... P60624 29733411
    35 5wf0:V (3.6) BS01 rna ? GO:0000027 ... P68919 29733411
    36 5wf0:V (3.6) BS02 rna ? GO:0000027 ... P68919 29733411
    37 5wf0:W (3.6) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    38 5wf0:W (3.6) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    39 5wf0:X (3.6) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    40 5wf0:Y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    41 5wf0:Z (3.6) BS01 rna ? GO:0000027 ... P0AG51 29733411
    42 5wf0:Z (3.6) BS02 rna ? GO:0000027 ... P0AG51 29733411
    43 5wf0:b (3.6) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    44 5wf0:c (3.6) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    45 5wf0:d (3.6) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    46 5wf0:e (3.6) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    47 5wf0:f (3.6) BS01 rna ? GO:0003735 ... P02358 29733411
    48 5wf0:g (3.6) BS01 rna ? GO:0003723 ... P02359 29733411
    49 5wf0:g (3.6) BS02 rna ? GO:0003723 ... P02359 29733411
    50 5wf0:h (3.6) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    51 5wf0:i (3.6) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    52 5wf0:j (3.6) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    53 5wf0:k (3.6) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    54 5wf0:l (3.6) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    55 5wf0:m (3.6) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    56 5wf0:m (3.6) BS02 rna ? GO:0000049 ... P0A7S9 29733411
    57 5wf0:n (3.6) BS01 rna ? GO:0003735 ... P0AG59 29733411
    58 5wf0:o (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    59 5wf0:o (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    60 5wf0:p (3.6) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    61 5wf0:q (3.6) BS01 rna ? GO:0000028 ... P0AG63 29733411
    62 5wf0:r (3.6) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    63 5wf0:s (3.6) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    64 5wf0:t (3.6) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    65 5wf0:u (3.6) BS01 rna ? GO:0000028 ... P68679 29733411
    66 5wf0:z (3.6) BS01 rna ? GO:0003723 ... P0CE48 29733411
    67 5wf0:z (3.6) BS02 rna ? GO:0003723 ... P0CE48 29733411
    68 5wf0:z (3.6) BS03 PHE ? GO:0003723 ... P0CE48 29733411
    69 5wf0:z (3.6) BS04 GTP ? GO:0003723 ... P0CE48 29733411
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417