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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 237 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5vyc:A1 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    2 5vyc:A2 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    3 5vyc:A3 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    4 5vyc:A4 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    5 5vyc:A5 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    6 5vyc:A6 (6.0) BS01 rna ? GO:0000028 ... P08865 28723557
    7 5vyc:B1 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    8 5vyc:B2 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    9 5vyc:B3 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    10 5vyc:B4 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    11 5vyc:B5 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    12 5vyc:B6 (6.0) BS01 rna ? GO:0002181 ... P61247 28723557
    13 5vyc:C1 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    14 5vyc:C2 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    15 5vyc:C3 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    16 5vyc:C4 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    17 5vyc:C5 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    18 5vyc:C6 (6.0) BS01 rna ? GO:0002181 ... P15880 28723557
    19 5vyc:D1 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    20 5vyc:D2 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    21 5vyc:D3 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    22 5vyc:D4 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    23 5vyc:D5 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    24 5vyc:D6 (6.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28723557
    25 5vyc:E1 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    26 5vyc:E2 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    27 5vyc:E3 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    28 5vyc:E4 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    29 5vyc:E5 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    30 5vyc:E6 (6.0) BS01 rna ? GO:0002181 ... P62701 28723557
    31 5vyc:F1 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    32 5vyc:F2 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    33 5vyc:F3 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    34 5vyc:F3 (6.0) BS02 rna ? GO:0000028 ... P46782 28723557
    35 5vyc:F4 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    36 5vyc:F4 (6.0) BS02 rna ? GO:0000028 ... P46782 28723557
    37 5vyc:F5 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    38 5vyc:F5 (6.0) BS02 rna ? GO:0000028 ... P46782 28723557
    39 5vyc:F6 (6.0) BS01 rna ? GO:0000028 ... P46782 28723557
    40 5vyc:G1 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    41 5vyc:G2 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    42 5vyc:G3 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    43 5vyc:G4 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    44 5vyc:G5 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    45 5vyc:G6 (6.0) BS01 rna ? GO:0000082 ... P62753 28723557
    46 5vyc:H1 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    47 5vyc:H2 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    48 5vyc:H3 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    49 5vyc:H4 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    50 5vyc:H5 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    51 5vyc:H6 (6.0) BS01 rna ? GO:0001843 ... P62081 28723557
    52 5vyc:I1 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    53 5vyc:I1 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    54 5vyc:I2 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    55 5vyc:I2 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    56 5vyc:I3 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    57 5vyc:I3 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    58 5vyc:I4 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    59 5vyc:I4 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    60 5vyc:I5 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    61 5vyc:I5 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    62 5vyc:I6 (6.0) BS01 rna ? GO:0000462 ... P62241 28723557
    63 5vyc:I6 (6.0) BS02 rna ? GO:0000462 ... P62241 28723557
    64 5vyc:J1 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    65 5vyc:J2 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    66 5vyc:J3 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    67 5vyc:J4 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    68 5vyc:J5 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    69 5vyc:J6 (6.0) BS01 rna ? GO:0002181 ... P46781 28723557
    70 5vyc:K1 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    71 5vyc:K2 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    72 5vyc:K3 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    73 5vyc:K4 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    74 5vyc:K5 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    75 5vyc:K6 (6.0) BS01 rna ? GO:0002181 ... P46783 28723557
    76 5vyc:L1 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    77 5vyc:L2 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    78 5vyc:L3 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    79 5vyc:L4 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    80 5vyc:L5 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    81 5vyc:L6 (6.0) BS01 rna ? GO:0002181 ... P62280 28723557
    82 5vyc:M1 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    83 5vyc:M2 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    84 5vyc:M3 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    85 5vyc:M4 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    86 5vyc:M5 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    87 5vyc:M6 (6.0) BS01 rna ? GO:0002181 ... P25398 28723557
    88 5vyc:N1 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    89 5vyc:N2 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    90 5vyc:N3 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    91 5vyc:N4 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    92 5vyc:N5 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    93 5vyc:N6 (6.0) BS01 rna ? GO:0002181 ... P62277 28723557
    94 5vyc:O1 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    95 5vyc:O2 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    96 5vyc:O3 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    97 5vyc:O4 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    98 5vyc:O5 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    99 5vyc:O6 (6.0) BS01 rna ? GO:0000028 ... P62263 28723557
    100 5vyc:P1 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    101 5vyc:P2 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    102 5vyc:P3 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    103 5vyc:P3 (6.0) BS02 rna ? GO:0000028 ... P62841 28723557
    104 5vyc:P4 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    105 5vyc:P4 (6.0) BS02 rna ? GO:0000028 ... P62841 28723557
    106 5vyc:P5 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    107 5vyc:P5 (6.0) BS02 rna ? GO:0000028 ... P62841 28723557
    108 5vyc:P6 (6.0) BS01 rna ? GO:0000028 ... P62841 28723557
    109 5vyc:P6 (6.0) BS02 rna ? GO:0000028 ... P62841 28723557
    110 5vyc:Q1 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    111 5vyc:Q2 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    112 5vyc:Q3 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    113 5vyc:Q4 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    114 5vyc:Q5 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    115 5vyc:Q6 (6.0) BS01 rna ? GO:0000462 ... P62249 28723557
    116 5vyc:R1 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    117 5vyc:R2 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    118 5vyc:R3 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    119 5vyc:R4 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    120 5vyc:R5 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    121 5vyc:R6 (6.0) BS01 rna ? GO:0002181 ... P08708 28723557
    122 5vyc:S1 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    123 5vyc:S1 (6.0) BS02 rna ? GO:0002181 ... P62269 28723557
    124 5vyc:S2 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    125 5vyc:S2 (6.0) BS02 rna ? GO:0002181 ... P62269 28723557
    126 5vyc:S3 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    127 5vyc:S4 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    128 5vyc:S4 (6.0) BS02 rna ? GO:0002181 ... P62269 28723557
    129 5vyc:S5 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    130 5vyc:S5 (6.0) BS02 rna ? GO:0002181 ... P62269 28723557
    131 5vyc:S6 (6.0) BS01 rna ? GO:0002181 ... P62269 28723557
    132 5vyc:S6 (6.0) BS02 rna ? GO:0002181 ... P62269 28723557
    133 5vyc:T1 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    134 5vyc:T2 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    135 5vyc:T3 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    136 5vyc:T4 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    137 5vyc:T5 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    138 5vyc:T6 (6.0) BS01 rna ? GO:0000028 ... P39019 28723557
    139 5vyc:U1 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    140 5vyc:U2 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    141 5vyc:U3 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    142 5vyc:U4 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    143 5vyc:U5 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    144 5vyc:U6 (6.0) BS01 rna ? GO:0002181 ... P60866 28723557
    145 5vyc:W1 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    146 5vyc:W2 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    147 5vyc:W3 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    148 5vyc:W4 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    149 5vyc:W5 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    150 5vyc:W6 (6.0) BS01 rna ? GO:0002181 ... P62244 28723557
    151 5vyc:X1 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    152 5vyc:X2 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    153 5vyc:X3 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    154 5vyc:X4 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    155 5vyc:X5 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    156 5vyc:X6 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    157 5vyc:Y1 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    158 5vyc:Y2 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    159 5vyc:Y3 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    160 5vyc:Y4 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    161 5vyc:Y5 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    162 5vyc:Y6 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    163 5vyc:Z1 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    164 5vyc:Z2 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    165 5vyc:Z3 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    166 5vyc:Z3 (6.0) BS02 rna ? GO:0002181 ... P62851 28723557
    167 5vyc:Z4 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    168 5vyc:Z5 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    169 5vyc:Z5 (6.0) BS02 rna ? GO:0002181 ... P62851 28723557
    170 5vyc:Z6 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    171 5vyc:a1 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    172 5vyc:a2 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    173 5vyc:a3 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    174 5vyc:a4 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    175 5vyc:a5 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    176 5vyc:a6 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    177 5vyc:b1 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    178 5vyc:b2 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    179 5vyc:b3 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    180 5vyc:b4 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    181 5vyc:b5 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    182 5vyc:b6 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    183 5vyc:c1 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    184 5vyc:c2 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    185 5vyc:c3 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    186 5vyc:c4 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    187 5vyc:c5 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    188 5vyc:c6 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    189 5vyc:d1 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    190 5vyc:d2 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    191 5vyc:d3 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    192 5vyc:d4 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    193 5vyc:d5 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    194 5vyc:d6 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    195 5vyc:e1 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    196 5vyc:e2 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    197 5vyc:e3 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    198 5vyc:e4 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    199 5vyc:e5 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    200 5vyc:e6 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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