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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 169 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5vpp:QB (3.9) BS01 rna ? GO:0003735 ... P80371 30262649
    2 5vpp:QC (3.9) BS01 rna ? GO:0003676 ... P80372 30262649
    3 5vpp:QD (3.9) BS01 rna ? GO:0003723 ... P80373 30262649
    4 5vpp:QD (3.9) BS02 ZN ? GO:0003723 ... P80373 30262649
    5 5vpp:QD (3.9) BS03 MG ? GO:0003723 ... P80373 30262649
    6 5vpp:QD (3.9) BS04 MG ? GO:0003723 ... P80373 30262649
    7 5vpp:QD (3.9) BS05 MG ? GO:0003723 ... P80373 30262649
    8 5vpp:QD (3.9) BS06 ZN ? GO:0003723 ... P80373 30262649
    9 5vpp:QE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 30262649
    10 5vpp:QE (3.9) BS02 MG ? GO:0003723 ... Q5SHQ5 30262649
    11 5vpp:QF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 30262649
    12 5vpp:QG (3.9) BS01 rna ? GO:0000028 ... P17291 30262649
    13 5vpp:QH (3.9) BS01 rna ? GO:0003735 ... P0DOY9 30262649
    14 5vpp:QI (3.9) BS01 rna ? GO:0000049 ... P80374 30262649
    15 5vpp:QI (3.9) BS02 rna ? GO:0000049 ... P80374 30262649
    16 5vpp:QJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 30262649
    17 5vpp:QK (3.9) BS01 rna ? GO:0003735 ... P80376 30262649
    18 5vpp:QK (3.9) BS02 rna ? GO:0003735 ... P80376 30262649
    19 5vpp:QL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 30262649
    20 5vpp:QM (3.9) BS01 rna ? GO:0000049 ... P80377 30262649
    21 5vpp:QN (3.9) BS01 rna ? GO:0003735 ... P0DOY6 30262649
    22 5vpp:QO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 30262649
    23 5vpp:QO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 30262649
    24 5vpp:QP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 30262649
    25 5vpp:QQ (3.9) BS01 rna ? GO:0003735 ... P0DOY7 30262649
    26 5vpp:QR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 30262649
    27 5vpp:QS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 30262649
    28 5vpp:QT (3.9) BS01 rna ? GO:0003723 ... P80380 30262649
    29 5vpp:R0 (3.9) BS01 rna ? GO:0003735 ... P60493 30262649
    30 5vpp:R0 (3.9) BS02 rna ? GO:0003735 ... P60493 30262649
    31 5vpp:R1 (3.9) BS01 rna ? GO:0003735 ... P60494 30262649
    32 5vpp:R1 (3.9) BS02 MG ? GO:0003735 ... P60494 30262649
    33 5vpp:R1 (3.9) BS03 MG ? GO:0003735 ... P60494 30262649
    34 5vpp:R2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 30262649
    35 5vpp:R3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 30262649
    36 5vpp:R3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 30262649
    37 5vpp:R3 (3.9) BS03 MG ? GO:0003735 ... Q5SHQ6 30262649
    38 5vpp:R4 (3.9) BS01 rna ? GO:0003735 ... Q5SJE1 30262649
    39 5vpp:R5 (3.9) BS01 rna ? GO:0003735 ... P80339 30262649
    40 5vpp:R6 (3.9) BS01 rna ? GO:0000049 ... P35871 30262649
    41 5vpp:R6 (3.9) BS02 MG ? GO:0000049 ... P35871 30262649
    42 5vpp:R7 (3.9) BS01 rna ? GO:0003735 ... P80340 30262649
    43 5vpp:R8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 30262649
    44 5vpp:R8 (3.9) BS02 MG ? GO:0003735 ... Q5SKU1 30262649
    45 5vpp:R8 (3.9) BS03 MG ? GO:0003735 ... Q5SKU1 30262649
    46 5vpp:R9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 30262649
    47 5vpp:RD (3.9) BS01 rna ? GO:0002181 ... P60405 30262649
    48 5vpp:RD (3.9) BS02 rna ? GO:0002181 ... P60405 30262649
    49 5vpp:RD (3.9) BS03 MG ? GO:0002181 ... P60405 30262649
    50 5vpp:RD (3.9) BS04 MG ? GO:0002181 ... P60405 30262649
    51 5vpp:RD (3.9) BS05 MG ? GO:0002181 ... P60405 30262649
    52 5vpp:RD (3.9) BS06 MG ? GO:0002181 ... P60405 30262649
    53 5vpp:RD (3.9) BS07 MG ? GO:0002181 ... P60405 30262649
    54 5vpp:RD (3.9) BS08 MG ? GO:0002181 ... P60405 30262649
    55 5vpp:RD (3.9) BS09 MG ? GO:0002181 ... P60405 30262649
    56 5vpp:RE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 30262649
    57 5vpp:RE (3.9) BS02 MG ? GO:0003735 ... Q5SHN8 30262649
    58 5vpp:RE (3.9) BS03 MG ? GO:0003735 ... Q5SHN8 30262649
    59 5vpp:RE (3.9) BS04 MG ? GO:0003735 ... Q5SHN8 30262649
    60 5vpp:RE (3.9) BS05 MG ? GO:0003735 ... Q5SHN8 30262649
    61 5vpp:RF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 30262649
    62 5vpp:RF (3.9) BS02 MG ? GO:0003735 ... Q5SHN9 30262649
    63 5vpp:RF (3.9) BS03 MG ? GO:0003735 ... Q5SHN9 30262649
    64 5vpp:RF (3.9) BS04 MG ? GO:0003735 ... Q5SHN9 30262649
    65 5vpp:RG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 30262649
    66 5vpp:RG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 30262649
    67 5vpp:RH (3.9) BS01 rna ? GO:0002181 ... P0DOY8 30262649
    68 5vpp:RI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 30262649
    69 5vpp:RN (3.9) BS01 rna ? GO:0003729 ... P60488 30262649
    70 5vpp:RO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 30262649
    71 5vpp:RO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 30262649
    72 5vpp:RP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 30262649
    73 5vpp:RQ (3.9) BS01 rna ? GO:0000049 ... P60489 30262649
    74 5vpp:RQ (3.9) BS02 rna ? GO:0000049 ... P60489 30262649
    75 5vpp:RQ (3.9) BS03 MG ? GO:0000049 ... P60489 30262649
    76 5vpp:RQ (3.9) BS04 MG ? GO:0000049 ... P60489 30262649
    77 5vpp:RR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 30262649
    78 5vpp:RS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 30262649
    79 5vpp:RS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 30262649
    80 5vpp:RT (3.9) BS01 rna ? GO:0003735 ... P60490 30262649
    81 5vpp:RT (3.9) BS02 rna ? GO:0003735 ... P60490 30262649
    82 5vpp:RT (3.9) BS03 MG ? GO:0003735 ... P60490 30262649
    83 5vpp:RU (3.9) BS01 rna ? GO:0000027 ... P60491 30262649
    84 5vpp:RU (3.9) BS02 MG ? GO:0000027 ... P60491 30262649
    85 5vpp:RV (3.9) BS01 rna ? GO:0003723 ... P60492 30262649
    86 5vpp:RW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 30262649
    87 5vpp:RX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 30262649
    88 5vpp:RY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 30262649
    89 5vpp:RY (3.9) BS02 MG ? GO:0003723 ... Q5SHP9 30262649
    90 5vpp:RY (3.9) BS03 MG ? GO:0003723 ... Q5SHP9 30262649
    91 5vpp:RZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 30262649
    92 5vpp:RZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 30262649
    93 5vpp:XB (3.9) BS01 rna ? GO:0003735 ... P80371 30262649
    94 5vpp:XC (3.9) BS01 rna ? GO:0003676 ... P80372 30262649
    95 5vpp:XC (3.9) BS02 MG ? GO:0003676 ... P80372 30262649
    96 5vpp:XD (3.9) BS01 rna ? GO:0003723 ... P80373 30262649
    97 5vpp:XD (3.9) BS02 ZN ? GO:0003723 ... P80373 30262649
    98 5vpp:XD (3.9) BS03 MG ? GO:0003723 ... P80373 30262649
    99 5vpp:XE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 30262649
    100 5vpp:XF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 30262649
    101 5vpp:XG (3.9) BS01 rna ? GO:0000028 ... P17291 30262649
    102 5vpp:XH (3.9) BS01 rna ? GO:0003735 ... P0DOY9 30262649
    103 5vpp:XI (3.9) BS01 rna ? GO:0000049 ... P80374 30262649
    104 5vpp:XJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 30262649
    105 5vpp:XK (3.9) BS01 rna ? GO:0003735 ... P80376 30262649
    106 5vpp:XK (3.9) BS02 rna ? GO:0003735 ... P80376 30262649
    107 5vpp:XL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 30262649
    108 5vpp:XL (3.9) BS02 MG ? GO:0000049 ... Q5SHN3 30262649
    109 5vpp:XM (3.9) BS01 rna ? GO:0000049 ... P80377 30262649
    110 5vpp:XM (3.9) BS02 MG ? GO:0000049 ... P80377 30262649
    111 5vpp:XN (3.9) BS01 rna ? GO:0003735 ... P0DOY6 30262649
    112 5vpp:XO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 30262649
    113 5vpp:XO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 30262649
    114 5vpp:XP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 30262649
    115 5vpp:XP (3.9) BS02 MG ? GO:0003735 ... Q5SJH3 30262649
    116 5vpp:XQ (3.9) BS01 rna ? GO:0003735 ... P0DOY7 30262649
    117 5vpp:XR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 30262649
    118 5vpp:XS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 30262649
    119 5vpp:XT (3.9) BS01 rna ? GO:0003723 ... P80380 30262649
    120 5vpp:Y0 (3.9) BS01 rna ? GO:0003735 ... P60493 30262649
    121 5vpp:Y0 (3.9) BS02 rna ? GO:0003735 ... P60493 30262649
    122 5vpp:Y1 (3.9) BS01 rna ? GO:0003735 ... P60494 30262649
    123 5vpp:Y1 (3.9) BS02 MG ? GO:0003735 ... P60494 30262649
    124 5vpp:Y2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 30262649
    125 5vpp:Y3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 30262649
    126 5vpp:Y3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 30262649
    127 5vpp:Y4 (3.9) BS01 rna ? GO:0003735 ... Q5SJE1 30262649
    128 5vpp:Y5 (3.9) BS01 rna ? GO:0003735 ... P80339 30262649
    129 5vpp:Y6 (3.9) BS01 rna ? GO:0000049 ... P35871 30262649
    130 5vpp:Y7 (3.9) BS01 rna ? GO:0003735 ... P80340 30262649
    131 5vpp:Y8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 30262649
    132 5vpp:Y8 (3.9) BS02 MG ? GO:0003735 ... Q5SKU1 30262649
    133 5vpp:Y9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 30262649
    134 5vpp:Y9 (3.9) BS02 ZN ? GO:0003735 ... Q5SHR2 30262649
    135 5vpp:YD (3.9) BS01 rna ? GO:0002181 ... P60405 30262649
    136 5vpp:YD (3.9) BS02 rna ? GO:0002181 ... P60405 30262649
    137 5vpp:YD (3.9) BS03 MG ? GO:0002181 ... P60405 30262649
    138 5vpp:YD (3.9) BS04 MG ? GO:0002181 ... P60405 30262649
    139 5vpp:YE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 30262649
    140 5vpp:YE (3.9) BS02 MG ? GO:0003735 ... Q5SHN8 30262649
    141 5vpp:YE (3.9) BS03 MG ? GO:0003735 ... Q5SHN8 30262649
    142 5vpp:YF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 30262649
    143 5vpp:YG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 30262649
    144 5vpp:YG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 30262649
    145 5vpp:YH (3.9) BS01 rna ? GO:0002181 ... P0DOY8 30262649
    146 5vpp:YI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 30262649
    147 5vpp:YI (3.9) BS02 rna ? GO:0003735 ... Q5SLQ1 30262649
    148 5vpp:YN (3.9) BS01 rna ? GO:0003729 ... P60488 30262649
    149 5vpp:YO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 30262649
    150 5vpp:YO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 30262649
    151 5vpp:YP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 30262649
    152 5vpp:YQ (3.9) BS01 rna ? GO:0000049 ... P60489 30262649
    153 5vpp:YQ (3.9) BS02 rna ? GO:0000049 ... P60489 30262649
    154 5vpp:YQ (3.9) BS03 MG ? GO:0000049 ... P60489 30262649
    155 5vpp:YR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 30262649
    156 5vpp:YR (3.9) BS02 MG ? GO:0003735 ... Q9Z9H5 30262649
    157 5vpp:YS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 30262649
    158 5vpp:YS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 30262649
    159 5vpp:YT (3.9) BS01 rna ? GO:0003735 ... P60490 30262649
    160 5vpp:YT (3.9) BS02 rna ? GO:0003735 ... P60490 30262649
    161 5vpp:YT (3.9) BS03 MG ? GO:0003735 ... P60490 30262649
    162 5vpp:YT (3.9) BS04 MG ? GO:0003735 ... P60490 30262649
    163 5vpp:YU (3.9) BS01 rna ? GO:0000027 ... P60491 30262649
    164 5vpp:YV (3.9) BS01 rna ? GO:0003723 ... P60492 30262649
    165 5vpp:YW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 30262649
    166 5vpp:YX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 30262649
    167 5vpp:YY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 30262649
    168 5vpp:YY (3.9) BS02 MG ? GO:0003723 ... Q5SHP9 30262649
    169 5vpp:YZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 30262649
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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