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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5v7q:0 (3.7) BS01 rna ? GO:0003735 ... P9WH99 28977617
    2 5v7q:1 (3.7) BS01 rna ? GO:0003735 ... P9WH95 28977617
    3 5v7q:2 (3.7) BS01 rna ? GO:0003735 ... P9WH93 28977617
    4 5v7q:3 (3.7) BS01 rna ? GO:0003735 ... P9WH91 28977617
    5 5v7q:4 (3.7) BS01 rna ? GO:0003735 ... P9WH89 28977617
    6 5v7q:C (3.7) BS01 rna ? GO:0002181 ... P9WHA5 28977617
    7 5v7q:D (3.7) BS01 rna ? GO:0003735 ... P9WH87 28977617
    8 5v7q:E (3.7) BS01 rna ? GO:0003735 ... P9WH85 28977617
    9 5v7q:F (3.7) BS01 rna ? GO:0000049 ... P9WH83 28977617
    10 5v7q:F (3.7) BS02 rna ? GO:0000049 ... P9WH83 28977617
    11 5v7q:G (3.7) BS01 rna ? GO:0002181 ... P9WH81 28977617
    12 5v7q:H (3.7) BS01 rna ? GO:0003735 ... P9WH79 28977617
    13 5v7q:J (3.7) BS01 rna ? GO:0003729 ... P9WHE1 28977617
    14 5v7q:K (3.7) BS01 rna ? GO:0003735 ... P9WHD9 28977617
    15 5v7q:L (3.7) BS01 rna ? GO:0003735 ... P9WHD7 28977617
    16 5v7q:M (3.7) BS01 rna ? GO:0000049 ... P9WHD5 28977617
    17 5v7q:N (3.7) BS01 rna ? GO:0003735 ... P9WHD3 28977617
    18 5v7q:O (3.7) BS01 rna ? GO:0003735 ... P9WHD1 28977617
    19 5v7q:O (3.7) BS02 rna ? GO:0003735 ... P9WHD1 28977617
    20 5v7q:P (3.7) BS01 rna ? GO:0003735 ... P9WHC9 28977617
    21 5v7q:Q (3.7) BS01 rna ? GO:0000027 ... P9WHC5 28977617
    22 5v7q:R (3.7) BS01 rna ? GO:0003723 ... P9WHC3 28977617
    23 5v7q:S (3.7) BS01 rna ? GO:0003735 ... P9WHC1 28977617
    24 5v7q:T (3.7) BS01 rna ? GO:0000027 ... P9WHB9 28977617
    25 5v7q:U (3.7) BS01 rna ? GO:0003723 ... P9WHB7 28977617
    26 5v7q:V (3.7) BS01 rna ? GO:0003723 ... P9WHB5 28977617
    27 5v7q:V (3.7) BS02 rna ? GO:0003723 ... P9WHB5 28977617
    28 5v7q:W (3.7) BS01 rna ? GO:0003735 ... P9WHB3 28977617
    29 5v7q:W (3.7) BS02 rna ? GO:0003735 ... P9WHB3 28977617
    30 5v7q:X (3.7) BS01 rna ? GO:0003735 ... P0DV54 28977617
    31 5v7q:Y (3.7) BS01 rna ? GO:0003735 ... P9WHA7 28977617
    32 5v7q:Z (3.7) BS01 rna ? GO:0003735 ... P9WHA3 28977617
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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