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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5uym:03 (3.2) BS01 rna ? GO:0000027 ... P0A7L0 28538735
    2 5uym:04 (3.2) BS01 rna ? GO:0000027 ... P60422 28538735
    3 5uym:04 (3.2) BS02 rna ? GO:0000027 ... P60422 28538735
    4 5uym:05 (3.2) BS01 rna ? GO:0000027 ... P60438 28538735
    5 5uym:06 (3.2) BS01 rna ? GO:0001070 ... P60723 28538735
    6 5uym:07 (3.2) BS01 rna ? GO:0000027 ... P62399 28538735
    7 5uym:07 (3.2) BS02 rna ? GO:0000027 ... P62399 28538735
    8 5uym:07 (3.2) BS03 rna ? GO:0000027 ... P62399 28538735
    9 5uym:08 (3.2) BS01 rna ? GO:0000027 ... P0AG55 28538735
    10 5uym:09 (3.2) BS01 rna ? GO:0002181 ... P0A7R1 28538735
    11 5uym:10 (3.2) BS01 rna ? GO:0003735 ... P0A7J3 28538735
    12 5uym:11 (3.2) BS01 rna ? GO:0000027 ... P0A7J7 28538735
    13 5uym:12 (3.2) BS01 rna ? GO:0002181 ... P0AA10 28538735
    14 5uym:13 (3.2) BS01 rna ? GO:0002181 ... P0ADY3 28538735
    15 5uym:13 (3.2) BS02 rna ? GO:0002181 ... P0ADY3 28538735
    16 5uym:14 (3.2) BS01 rna ? GO:0002181 ... P02413 28538735
    17 5uym:15 (3.2) BS01 rna ? GO:0000027 ... P0ADY7 28538735
    18 5uym:15 (3.2) BS02 rna ? GO:0000027 ... P0ADY7 28538735
    19 5uym:16 (3.2) BS01 rna ? GO:0000027 ... P0AG44 28538735
    20 5uym:17 (3.2) BS01 rna ? GO:0002181 ... P0C018 28538735
    21 5uym:17 (3.2) BS02 rna ? GO:0002181 ... P0C018 28538735
    22 5uym:18 (3.2) BS01 rna ? GO:0000027 ... P0A7K6 28538735
    23 5uym:18 (3.2) BS02 rna ? GO:0000027 ... P0A7K6 28538735
    24 5uym:19 (3.2) BS01 rna ? GO:0000027 ... P0A7L3 28538735
    25 5uym:20 (3.2) BS01 rna ? GO:0002181 ... P0AG48 28538735
    26 5uym:21 (3.2) BS01 rna ? GO:0002181 ... P61175 28538735
    27 5uym:22 (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 28538735
    28 5uym:23 (3.2) BS01 rna ? GO:0000027 ... P60624 28538735
    29 5uym:24 (3.2) BS01 rna ? GO:0000027 ... P68919 28538735
    30 5uym:25 (3.2) BS01 rna ? GO:0003735 ... P0A7L8 28538735
    31 5uym:25 (3.2) BS02 rna ? GO:0003735 ... P0A7L8 28538735
    32 5uym:26 (3.2) BS01 rna ? GO:0000027 ... P0A7M2 28538735
    33 5uym:27 (3.2) BS01 rna ? GO:0000027 ... P0A7M6 28538735
    34 5uym:28 (3.2) BS01 rna ? GO:0000027 ... P0AG51 28538735
    35 5uym:28 (3.2) BS02 rna ? GO:0000027 ... P0AG51 28538735
    36 5uym:29 (3.2) BS01 rna ? GO:0002181 ... P0A7M9 28538735
    37 5uym:29 (3.2) BS02 ZN ? GO:0002181 ... P0A7M9 28538735
    38 5uym:30 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 28538735
    39 5uym:31 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 28538735
    40 5uym:32 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 28538735
    41 5uym:33 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 28538735
    42 5uym:34 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 28538735
    43 5uym:B (3.2) BS01 rna ? GO:0000028 ... P0A7V0 28538735
    44 5uym:C (3.2) BS01 rna ? GO:0003676 ... P0A7V3 28538735
    45 5uym:D (3.2) BS01 rna ? GO:0000028 ... P0A7V8 28538735
    46 5uym:E (3.2) BS01 rna ? GO:0000028 ... P0A7W1 28538735
    47 5uym:F (3.2) BS01 rna ? GO:0003735 ... P02358 28538735
    48 5uym:G (3.2) BS01 rna ? GO:0003723 ... P02359 28538735
    49 5uym:G (3.2) BS02 rna ? GO:0003723 ... P02359 28538735
    50 5uym:G (3.2) BS03 rna ? GO:0003723 ... P02359 28538735
    51 5uym:H (3.2) BS01 rna ? GO:0000028 ... P0A7W7 28538735
    52 5uym:I (3.2) BS01 rna ? GO:0000049 ... P0A7X3 28538735
    53 5uym:J (3.2) BS01 rna ? GO:0000049 ... P0A7R5 28538735
    54 5uym:K (3.2) BS01 rna ? GO:0002181 ... P0A7R9 28538735
    55 5uym:L (3.2) BS01 rna ? GO:0000049 ... P0A7S3 28538735
    56 5uym:M (3.2) BS01 rna ? GO:0000049 ... P0A7S9 28538735
    57 5uym:M (3.2) BS02 rna ? GO:0000049 ... P0A7S9 28538735
    58 5uym:N (3.2) BS01 rna ? GO:0000028 ... P0AG59 28538735
    59 5uym:O (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 28538735
    60 5uym:O (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 28538735
    61 5uym:P (3.2) BS01 rna ? GO:0000028 ... P0A7T3 28538735
    62 5uym:Q (3.2) BS01 rna ? GO:0000028 ... P0AG63 28538735
    63 5uym:R (3.2) BS01 rna ? GO:0003735 ... P0A7T7 28538735
    64 5uym:S (3.2) BS01 rna ? GO:0003723 ... P0A7U3 28538735
    65 5uym:T (3.2) BS01 rna ? GO:0000028 ... P0A7U7 28538735
    66 5uym:U (3.2) BS01 rna ? GO:0000028 ... P68679 28538735
    67 5uym:U (3.2) BS02 rna ? GO:0000028 ... P68679 28538735
    68 5uym:Z (3.2) BS01 rna ? GO:0003723 ... P0CE47 28538735
    69 5uym:Z (3.2) BS02 rna ? GO:0003723 ... P0CE47 28538735
    70 5uym:Z (3.2) BS03 rna ? GO:0003723 ... P0CE47 28538735
    71 5uym:Z (3.2) BS04 PHE ? GO:0003723 ... P0CE47 28538735
    72 5uym:Z (3.2) BS05 MG ? GO:0003723 ... P0CE47 28538735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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