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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5uyk:03 (3.9) BS01 rna ? GO:0000027 ... P0A7L0 28538735
    2 5uyk:03 (3.9) BS02 rna ? GO:0000027 ... P0A7L0 28538735
    3 5uyk:04 (3.9) BS01 rna ? GO:0000027 ... P60422 28538735
    4 5uyk:05 (3.9) BS01 rna ? GO:0000027 ... P60438 28538735
    5 5uyk:06 (3.9) BS01 rna ? GO:0001070 ... P60723 28538735
    6 5uyk:07 (3.9) BS01 rna ? GO:0000027 ... P62399 28538735
    7 5uyk:07 (3.9) BS02 rna ? GO:0000027 ... P62399 28538735
    8 5uyk:07 (3.9) BS03 rna ? GO:0000027 ... P62399 28538735
    9 5uyk:08 (3.9) BS01 rna ? GO:0000027 ... P0AG55 28538735
    10 5uyk:09 (3.9) BS01 rna ? GO:0002181 ... P0A7R1 28538735
    11 5uyk:10 (3.9) BS01 rna ? GO:0003735 ... P0A7J3 28538735
    12 5uyk:11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 28538735
    13 5uyk:12 (3.9) BS01 rna ? GO:0002181 ... P0AA10 28538735
    14 5uyk:13 (3.9) BS01 rna ? GO:0002181 ... P0ADY3 28538735
    15 5uyk:13 (3.9) BS02 rna ? GO:0002181 ... P0ADY3 28538735
    16 5uyk:14 (3.9) BS01 rna ? GO:0002181 ... P02413 28538735
    17 5uyk:15 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 28538735
    18 5uyk:15 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 28538735
    19 5uyk:16 (3.9) BS01 rna ? GO:0000027 ... P0AG44 28538735
    20 5uyk:17 (3.9) BS01 rna ? GO:0002181 ... P0C018 28538735
    21 5uyk:17 (3.9) BS02 rna ? GO:0002181 ... P0C018 28538735
    22 5uyk:18 (3.9) BS01 rna ? GO:0000027 ... P0A7K6 28538735
    23 5uyk:18 (3.9) BS02 rna ? GO:0000027 ... P0A7K6 28538735
    24 5uyk:19 (3.9) BS01 rna ? GO:0000027 ... P0A7L3 28538735
    25 5uyk:20 (3.9) BS01 rna ? GO:0002181 ... P0AG48 28538735
    26 5uyk:21 (3.9) BS01 rna ? GO:0002181 ... P61175 28538735
    27 5uyk:22 (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 28538735
    28 5uyk:23 (3.9) BS01 rna ? GO:0000027 ... P60624 28538735
    29 5uyk:24 (3.9) BS01 rna ? GO:0000027 ... P68919 28538735
    30 5uyk:24 (3.9) BS02 rna ? GO:0000027 ... P68919 28538735
    31 5uyk:25 (3.9) BS01 rna ? GO:0003735 ... P0A7L8 28538735
    32 5uyk:25 (3.9) BS02 rna ? GO:0003735 ... P0A7L8 28538735
    33 5uyk:26 (3.9) BS01 rna ? GO:0000027 ... P0A7M2 28538735
    34 5uyk:27 (3.9) BS01 rna ? GO:0000027 ... P0A7M6 28538735
    35 5uyk:28 (3.9) BS01 rna ? GO:0000027 ... P0AG51 28538735
    36 5uyk:28 (3.9) BS02 rna ? GO:0000027 ... P0AG51 28538735
    37 5uyk:29 (3.9) BS01 rna ? GO:0002181 ... P0A7M9 28538735
    38 5uyk:30 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 28538735
    39 5uyk:31 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 28538735
    40 5uyk:32 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 28538735
    41 5uyk:33 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 28538735
    42 5uyk:34 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 28538735
    43 5uyk:B (3.9) BS01 rna ? GO:0000028 ... P0A7V0 28538735
    44 5uyk:C (3.9) BS01 rna ? GO:0003676 ... P0A7V3 28538735
    45 5uyk:D (3.9) BS01 rna ? GO:0000028 ... P0A7V8 28538735
    46 5uyk:E (3.9) BS01 rna ? GO:0000028 ... P0A7W1 28538735
    47 5uyk:F (3.9) BS01 rna ? GO:0003735 ... P02358 28538735
    48 5uyk:G (3.9) BS01 rna ? GO:0003723 ... P02359 28538735
    49 5uyk:G (3.9) BS02 rna ? GO:0003723 ... P02359 28538735
    50 5uyk:G (3.9) BS03 rna ? GO:0003723 ... P02359 28538735
    51 5uyk:H (3.9) BS01 rna ? GO:0000028 ... P0A7W7 28538735
    52 5uyk:I (3.9) BS01 rna ? GO:0000049 ... P0A7X3 28538735
    53 5uyk:J (3.9) BS01 rna ? GO:0000049 ... P0A7R5 28538735
    54 5uyk:K (3.9) BS01 rna ? GO:0002181 ... P0A7R9 28538735
    55 5uyk:L (3.9) BS01 rna ? GO:0000049 ... P0A7S3 28538735
    56 5uyk:M (3.9) BS01 rna ? GO:0000049 ... P0A7S9 28538735
    57 5uyk:M (3.9) BS02 rna ? GO:0000049 ... P0A7S9 28538735
    58 5uyk:N (3.9) BS01 rna ? GO:0000028 ... P0AG59 28538735
    59 5uyk:O (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 28538735
    60 5uyk:O (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 28538735
    61 5uyk:P (3.9) BS01 rna ? GO:0000028 ... P0A7T3 28538735
    62 5uyk:Q (3.9) BS01 rna ? GO:0000028 ... P0AG63 28538735
    63 5uyk:R (3.9) BS01 rna ? GO:0003735 ... P0A7T7 28538735
    64 5uyk:S (3.9) BS01 rna ? GO:0003723 ... P0A7U3 28538735
    65 5uyk:T (3.9) BS01 rna ? GO:0000028 ... P0A7U7 28538735
    66 5uyk:U (3.9) BS01 rna ? GO:0000028 ... P68679 28538735
    67 5uyk:Z (3.9) BS01 rna ? GO:0003723 ... P0CE47 28538735
    68 5uyk:Z (3.9) BS02 rna ? GO:0003723 ... P0CE47 28538735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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