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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5uq7:0 (3.5) BS01 rna ? GO:0003735 ... P60493 29456023
    2 5uq7:0 (3.5) BS02 rna ? GO:0003735 ... P60493 29456023
    3 5uq7:1 (3.5) BS01 rna ? GO:0003735 ... P60494 29456023
    4 5uq7:2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 29456023
    5 5uq7:3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 29456023
    6 5uq7:3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 29456023
    7 5uq7:4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 29456023
    8 5uq7:4 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 29456023
    9 5uq7:5 (3.5) BS01 rna ? GO:0003735 ... P80339 29456023
    10 5uq7:5 (3.5) BS02 ZN ? GO:0003735 ... P80339 29456023
    11 5uq7:6 (3.5) BS01 rna ? GO:0000049 ... P35871 29456023
    12 5uq7:6 (3.5) BS02 ZN ? GO:0000049 ... P35871 29456023
    13 5uq7:7 (3.5) BS01 rna ? GO:0003735 ... P80340 29456023
    14 5uq7:8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 29456023
    15 5uq7:9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 29456023
    16 5uq7:9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 29456023
    17 5uq7:C (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 29456023
    18 5uq7:C (3.5) BS02 rna ? GO:0000049 ... Q5SLP7 29456023
    19 5uq7:D (3.5) BS01 rna ? GO:0002181 ... P60405 29456023
    20 5uq7:E (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 29456023
    21 5uq7:F (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 29456023
    22 5uq7:G (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 29456023
    23 5uq7:G (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 29456023
    24 5uq7:G (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 29456023
    25 5uq7:H (3.5) BS01 rna N/A GO:0003735 ... N/A 29456023
    26 5uq7:I (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 29456023
    27 5uq7:N (3.5) BS01 rna ? GO:0003729 ... P60488 29456023
    28 5uq7:O (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 29456023
    29 5uq7:O (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 29456023
    30 5uq7:P (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 29456023
    31 5uq7:Q (3.5) BS01 rna ? GO:0000049 ... P60489 29456023
    32 5uq7:Q (3.5) BS02 rna ? GO:0000049 ... P60489 29456023
    33 5uq7:R (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 29456023
    34 5uq7:S (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 29456023
    35 5uq7:S (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 29456023
    36 5uq7:T (3.5) BS01 rna ? GO:0003735 ... P60490 29456023
    37 5uq7:T (3.5) BS02 rna ? GO:0003735 ... P60490 29456023
    38 5uq7:U (3.5) BS01 rna ? GO:0000027 ... P60491 29456023
    39 5uq7:V (3.5) BS01 rna ? GO:0003723 ... P60492 29456023
    40 5uq7:W (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 29456023
    41 5uq7:X (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 29456023
    42 5uq7:Y (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 29456023
    43 5uq7:Y (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 29456023
    44 5uq7:Z (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 29456023
    45 5uq7:Z (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 29456023
    46 5uq7:b (3.5) BS01 rna ? GO:0003735 ... P80371 29456023
    47 5uq7:c (3.5) BS01 rna ? GO:0003676 ... P80372 29456023
    48 5uq7:c (3.5) BS02 rna ? GO:0003676 ... P80372 29456023
    49 5uq7:d (3.5) BS01 rna ? GO:0003723 ... P80373 29456023
    50 5uq7:d (3.5) BS02 SF4 ? GO:0003723 ... P80373 29456023
    51 5uq7:e (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 29456023
    52 5uq7:e (3.5) BS02 rna ? GO:0003723 ... Q5SHQ5 29456023
    53 5uq7:f (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 29456023
    54 5uq7:g (3.5) BS01 rna ? GO:0000028 ... P17291 29456023
    55 5uq7:g (3.5) BS02 rna ? GO:0000028 ... P17291 29456023
    56 5uq7:g (3.5) BS03 rna ? GO:0000028 ... P17291 29456023
    57 5uq7:h (3.5) BS01 rna N/A GO:0003735 ... N/A 29456023
    58 5uq7:i (3.5) BS01 rna ? GO:0000049 ... P80374 29456023
    59 5uq7:j (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 29456023
    60 5uq7:k (3.5) BS01 rna ? GO:0003735 ... P80376 29456023
    61 5uq7:l (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 29456023
    62 5uq7:m (3.5) BS01 rna ? GO:0000049 ... P80377 29456023
    63 5uq7:n (3.5) BS01 rna N/A GO:0003735 ... N/A 29456023
    64 5uq7:n (3.5) BS02 ZN N/A GO:0003735 ... N/A 29456023
    65 5uq7:o (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 29456023
    66 5uq7:o (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 29456023
    67 5uq7:p (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 29456023
    68 5uq7:q (3.5) BS01 rna N/A GO:0003735 ... N/A 29456023
    69 5uq7:r (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 29456023
    70 5uq7:s (3.5) BS01 rna ? GO:0003723 ... Q5SHP2 29456023
    71 5uq7:t (3.5) BS01 rna ? GO:0003723 ... P80380 29456023
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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