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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 289 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5tgm:C0 (3.5) BS01 rna ? GO:0000054 ... Q08745 27827794
    2 5tgm:C1 (3.5) BS01 rna ? GO:0000028 ... P0CX47 27827794
    3 5tgm:C2 (3.5) BS01 rna ? GO:0000028 ... P48589 27827794
    4 5tgm:C3 (3.5) BS01 rna ? GO:0000462 ... P05756 27827794
    5 5tgm:C3 (3.5) BS02 rna ? GO:0000462 ... P05756 27827794
    6 5tgm:C3 (3.5) BS03 OHX ? GO:0000462 ... P05756 27827794
    7 5tgm:C3 (3.5) BS04 OHX ? GO:0000462 ... P05756 27827794
    8 5tgm:C4 (3.5) BS01 rna ? GO:0000028 ... P39516 27827794
    9 5tgm:C5 (3.5) BS01 rna ? GO:0000028 ... Q01855 27827794
    10 5tgm:C5 (3.5) BS02 rna ? GO:0000028 ... Q01855 27827794
    11 5tgm:C5 (3.5) BS03 OHX ? GO:0000028 ... Q01855 27827794
    12 5tgm:C6 (3.5) BS01 rna ? GO:0000462 ... P0CX51 27827794
    13 5tgm:C7 (3.5) BS01 rna ? GO:0000028 ... P14127 27827794
    14 5tgm:C8 (3.5) BS01 rna ? GO:0000054 ... P0CX55 27827794
    15 5tgm:C8 (3.5) BS02 MG ? GO:0000054 ... P0CX55 27827794
    16 5tgm:C9 (3.5) BS01 rna ? GO:0000028 ... P07280 27827794
    17 5tgm:D0 (3.5) BS01 rna ? GO:0000462 ... P38701 27827794
    18 5tgm:D2 (3.5) BS01 rna ? GO:0002181 ... P0C0W1 27827794
    19 5tgm:D3 (3.5) BS01 rna ? GO:0000462 ... P0CX29 27827794
    20 5tgm:D4 (3.5) BS01 rna ? GO:0000462 ... P0CX31 27827794
    21 5tgm:D5 (3.5) BS01 rna ? N/A Q3E792 27827794
    22 5tgm:D6 (3.5) BS01 rna ? GO:0003735 ... P39939 27827794
    23 5tgm:D6 (3.5) BS02 ZN ? GO:0003735 ... P39939 27827794
    24 5tgm:D7 (3.5) BS01 rna ? GO:0000028 ... P35997 27827794
    25 5tgm:D8 (3.5) BS01 rna ? GO:0000028 ... Q3E7X9 27827794
    26 5tgm:D9 (3.5) BS01 rna ? GO:0002181 ... P41057 27827794
    27 5tgm:D9 (3.5) BS02 ZN ? GO:0002181 ... P41057 27827794
    28 5tgm:D9 (3.5) BS03 OHX ? GO:0002181 ... P41057 27827794
    29 5tgm:D9 (3.5) BS04 MG ? GO:0002181 ... P41057 27827794
    30 5tgm:E0 (3.5) BS01 rna ? GO:0002181 ... P0CX33 27827794
    31 5tgm:E1 (3.5) BS01 rna ? GO:0003735 ... P05759 27827794
    32 5tgm:E1 (3.5) BS02 ZN ? GO:0003735 ... P05759 27827794
    33 5tgm:L2 (3.5) BS01 rna ? GO:0002181 ... P0CX45 27827794
    34 5tgm:L2 (3.5) BS02 rna ? GO:0002181 ... P0CX45 27827794
    35 5tgm:L2 (3.5) BS03 MG ? GO:0002181 ... P0CX45 27827794
    36 5tgm:L3 (3.5) BS01 rna ? GO:0000027 ... P14126 27827794
    37 5tgm:L3 (3.5) BS02 OHX ? GO:0000027 ... P14126 27827794
    38 5tgm:L3 (3.5) BS03 OHX ? GO:0000027 ... P14126 27827794
    39 5tgm:L4 (3.5) BS01 rna ? GO:0002181 ... P10664 27827794
    40 5tgm:L4 (3.5) BS02 rna ? GO:0002181 ... P10664 27827794
    41 5tgm:L4 (3.5) BS03 OHX ? GO:0002181 ... P10664 27827794
    42 5tgm:L4 (3.5) BS04 MG ? GO:0002181 ... P10664 27827794
    43 5tgm:L4 (3.5) BS05 MG ? GO:0002181 ... P10664 27827794
    44 5tgm:L5 (3.5) BS01 rna ? GO:0000027 ... P26321 27827794
    45 5tgm:L5 (3.5) BS02 rna ? GO:0000027 ... P26321 27827794
    46 5tgm:L6 (3.5) BS01 rna ? GO:0000027 ... Q02326 27827794
    47 5tgm:L7 (3.5) BS01 rna ? GO:0000463 ... P05737 27827794
    48 5tgm:L7 (3.5) BS02 rna ? GO:0000463 ... P05737 27827794
    49 5tgm:L7 (3.5) BS03 OHX ? GO:0000463 ... P05737 27827794
    50 5tgm:L8 (3.5) BS01 rna ? GO:0000470 ... P17076 27827794
    51 5tgm:L8 (3.5) BS02 rna ? GO:0000470 ... P17076 27827794
    52 5tgm:L9 (3.5) BS01 rna ? GO:0002181 ... P05738 27827794
    53 5tgm:M0 (3.5) BS01 rna ? GO:0000027 ... P41805 27827794
    54 5tgm:M0 (3.5) BS02 rna ? GO:0000027 ... P41805 27827794
    55 5tgm:M0 (3.5) BS03 OHX ? GO:0000027 ... P41805 27827794
    56 5tgm:M1 (3.5) BS01 rna ? GO:0000027 ... Q3E757 27827794
    57 5tgm:M1 (3.5) BS02 rna ? GO:0000027 ... Q3E757 27827794
    58 5tgm:M3 (3.5) BS01 rna ? GO:0002181 ... Q12690 27827794
    59 5tgm:M3 (3.5) BS02 rna ? GO:0002181 ... Q12690 27827794
    60 5tgm:M3 (3.5) BS03 MG ? GO:0002181 ... Q12690 27827794
    61 5tgm:M4 (3.5) BS01 rna ? GO:0000027 ... P36105 27827794
    62 5tgm:M5 (3.5) BS01 rna ? GO:0002181 ... P05748 27827794
    63 5tgm:M5 (3.5) BS02 rna ? GO:0002181 ... P05748 27827794
    64 5tgm:M5 (3.5) BS03 OHX ? GO:0002181 ... P05748 27827794
    65 5tgm:M6 (3.5) BS01 rna ? GO:0000470 ... P26784 27827794
    66 5tgm:M7 (3.5) BS01 rna ? GO:0000448 ... P05740 27827794
    67 5tgm:M7 (3.5) BS02 rna ? GO:0000448 ... P05740 27827794
    68 5tgm:M7 (3.5) BS03 MG ? GO:0000448 ... P05740 27827794
    69 5tgm:M7 (3.5) BS04 MG ? GO:0000448 ... P05740 27827794
    70 5tgm:M8 (3.5) BS01 rna ? GO:0002181 ... P0CX49 27827794
    71 5tgm:M9 (3.5) BS01 rna ? GO:0002181 ... P0CX82 27827794
    72 5tgm:M9 (3.5) BS02 rna ? GO:0002181 ... P0CX82 27827794
    73 5tgm:M9 (3.5) BS03 OHX ? GO:0002181 ... P0CX82 27827794
    74 5tgm:N0 (3.5) BS01 rna ? GO:0002181 ... P0CX23 27827794
    75 5tgm:N0 (3.5) BS02 rna ? GO:0002181 ... P0CX23 27827794
    76 5tgm:N1 (3.5) BS01 rna ? GO:0002181 ... Q02753 27827794
    77 5tgm:N1 (3.5) BS02 rna ? GO:0002181 ... Q02753 27827794
    78 5tgm:N2 (3.5) BS01 rna ? GO:0003735 ... P05749 27827794
    79 5tgm:N3 (3.5) BS01 rna ? GO:0002181 ... P0CX41 27827794
    80 5tgm:N3 (3.5) BS02 rna ? GO:0002181 ... P0CX41 27827794
    81 5tgm:N3 (3.5) BS03 MG ? GO:0002181 ... P0CX41 27827794
    82 5tgm:N3 (3.5) BS04 MG ? GO:0002181 ... P0CX41 27827794
    83 5tgm:N4 (3.5) BS01 rna ? N/A P04449 27827794
    84 5tgm:N4 (3.5) BS02 rna ? N/A P04449 27827794
    85 5tgm:N5 (3.5) BS01 rna ? GO:0003735 ... P04456 27827794
    86 5tgm:N5 (3.5) BS02 rna ? GO:0003735 ... P04456 27827794
    87 5tgm:N5 (3.5) BS03 MG ? GO:0003735 ... P04456 27827794
    88 5tgm:N6 (3.5) BS01 rna ? GO:0002181 ... P05743 27827794
    89 5tgm:N6 (3.5) BS02 rna ? GO:0002181 ... P05743 27827794
    90 5tgm:N6 (3.5) BS03 MG ? GO:0002181 ... P05743 27827794
    91 5tgm:N7 (3.5) BS01 rna ? GO:0002181 ... P0C2H6 27827794
    92 5tgm:N8 (3.5) BS01 rna ? GO:0002181 ... P02406 27827794
    93 5tgm:N8 (3.5) BS02 MG ? GO:0002181 ... P02406 27827794
    94 5tgm:N9 (3.5) BS01 rna ? GO:0002181 ... P05747 27827794
    95 5tgm:N9 (3.5) BS02 OHX ? GO:0002181 ... P05747 27827794
    96 5tgm:O0 (3.5) BS01 rna ? GO:0002181 ... P14120 27827794
    97 5tgm:O1 (3.5) BS01 rna ? GO:0002181 ... P0C2H8 27827794
    98 5tgm:O2 (3.5) BS01 rna ? GO:0002181 ... P38061 27827794
    99 5tgm:O3 (3.5) BS01 rna ? GO:0000027 ... P05744 27827794
    100 5tgm:O3 (3.5) BS02 OHX ? GO:0000027 ... P05744 27827794
    101 5tgm:O4 (3.5) BS01 rna ? GO:0002181 ... P87262 27827794
    102 5tgm:O5 (3.5) BS01 rna ? GO:0000463 ... P0CX84 27827794
    103 5tgm:O5 (3.5) BS02 rna ? GO:0000463 ... P0CX84 27827794
    104 5tgm:O5 (3.5) BS03 MG ? GO:0000463 ... P0CX84 27827794
    105 5tgm:O6 (3.5) BS01 rna ? GO:0002181 ... P05745 27827794
    106 5tgm:O7 (3.5) BS01 rna ? GO:0000448 ... P49166 27827794
    107 5tgm:O7 (3.5) BS02 rna ? GO:0000448 ... P49166 27827794
    108 5tgm:O7 (3.5) BS03 OHX ? GO:0000448 ... P49166 27827794
    109 5tgm:O7 (3.5) BS04 OHX ? GO:0000448 ... P49166 27827794
    110 5tgm:O7 (3.5) BS05 ZN ? GO:0000448 ... P49166 27827794
    111 5tgm:O7 (3.5) BS06 OHX ? GO:0000448 ... P49166 27827794
    112 5tgm:O8 (3.5) BS01 rna ? GO:0002181 ... P49167 27827794
    113 5tgm:O9 (3.5) BS01 rna ? GO:0002181 ... P04650 27827794
    114 5tgm:O9 (3.5) BS02 rna ? GO:0002181 ... P04650 27827794
    115 5tgm:O9 (3.5) BS03 OHX ? GO:0002181 ... P04650 27827794
    116 5tgm:Q0 (3.5) BS01 rna ? GO:0003735 ... P0CH08 27827794
    117 5tgm:Q0 (3.5) BS02 ZN ? GO:0003735 ... P0CH08 27827794
    118 5tgm:Q2 (3.5) BS01 rna ? GO:0002181 ... P0CX27 27827794
    119 5tgm:Q2 (3.5) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    120 5tgm:Q2 (3.5) BS03 OHX ? GO:0002181 ... P0CX27 27827794
    121 5tgm:Q3 (3.5) BS01 rna ? GO:0002181 ... P0CX25 27827794
    122 5tgm:Q3 (3.5) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    123 5tgm:S0 (3.5) BS01 rna ? GO:0003735 ... P32905 27827794
    124 5tgm:S1 (3.5) BS01 rna ? GO:0003735 ... P33442 27827794
    125 5tgm:S2 (3.5) BS01 rna ? GO:0003723 ... P25443 27827794
    126 5tgm:S3 (3.5) BS01 rna ? GO:0000054 ... P05750 27827794
    127 5tgm:S4 (3.5) BS01 rna ? GO:0002181 ... P0CX35 27827794
    128 5tgm:S4 (3.5) BS02 MG ? GO:0002181 ... P0CX35 27827794
    129 5tgm:S5 (3.5) BS01 rna ? GO:0000028 ... P26783 27827794
    130 5tgm:S6 (3.5) BS01 rna ? GO:0000462 ... P0CX37 27827794
    131 5tgm:S7 (3.5) BS01 rna ? GO:0002181 ... P26786 27827794
    132 5tgm:S8 (3.5) BS01 rna ? GO:0000462 ... P0CX39 27827794
    133 5tgm:S8 (3.5) BS02 rna ? GO:0000462 ... P0CX39 27827794
    134 5tgm:S8 (3.5) BS03 OHX ? GO:0000462 ... P0CX39 27827794
    135 5tgm:S9 (3.5) BS01 rna ? GO:0000462 ... O13516 27827794
    136 5tgm:S9 (3.5) BS02 OHX ? GO:0000462 ... O13516 27827794
    137 5tgm:SM (3.5) BS01 rna ? GO:0000723 ... P39015 27827794
    138 5tgm:SM (3.5) BS02 rna ? GO:0000723 ... P39015 27827794
    139 5tgm:SR (3.5) BS01 rna ? GO:0001965 ... P38011 27827794
    140 5tgm:c0 (3.5) BS01 rna ? GO:0000054 ... Q08745 27827794
    141 5tgm:c1 (3.5) BS01 rna ? GO:0000028 ... P0CX47 27827794
    142 5tgm:c2 (3.5) BS01 rna ? GO:0000028 ... P48589 27827794
    143 5tgm:c3 (3.5) BS01 rna ? GO:0000462 ... P05756 27827794
    144 5tgm:c3 (3.5) BS02 rna ? GO:0000462 ... P05756 27827794
    145 5tgm:c3 (3.5) BS03 OHX ? GO:0000462 ... P05756 27827794
    146 5tgm:c4 (3.5) BS01 rna ? GO:0000028 ... P39516 27827794
    147 5tgm:c5 (3.5) BS01 rna ? GO:0000028 ... Q01855 27827794
    148 5tgm:c5 (3.5) BS02 OHX ? GO:0000028 ... Q01855 27827794
    149 5tgm:c6 (3.5) BS01 rna ? GO:0000462 ... P0CX51 27827794
    150 5tgm:c6 (3.5) BS02 MG ? GO:0000462 ... P0CX51 27827794
    151 5tgm:c7 (3.5) BS01 rna ? GO:0000028 ... P14127 27827794
    152 5tgm:c8 (3.5) BS01 rna ? GO:0000054 ... P0CX55 27827794
    153 5tgm:c8 (3.5) BS02 OHX ? GO:0000054 ... P0CX55 27827794
    154 5tgm:c8 (3.5) BS03 MG ? GO:0000054 ... P0CX55 27827794
    155 5tgm:c9 (3.5) BS01 rna ? GO:0000028 ... P07280 27827794
    156 5tgm:c9 (3.5) BS02 MG ? GO:0000028 ... P07280 27827794
    157 5tgm:d0 (3.5) BS01 rna ? GO:0000462 ... P38701 27827794
    158 5tgm:d2 (3.5) BS01 rna ? GO:0002181 ... P0C0W1 27827794
    159 5tgm:d3 (3.5) BS01 rna ? GO:0000462 ... P0CX29 27827794
    160 5tgm:d4 (3.5) BS01 rna ? GO:0000462 ... P0CX31 27827794
    161 5tgm:d5 (3.5) BS01 rna ? N/A Q3E792 27827794
    162 5tgm:d6 (3.5) BS01 rna ? GO:0003735 ... P39939 27827794
    163 5tgm:d6 (3.5) BS02 ZN ? GO:0003735 ... P39939 27827794
    164 5tgm:d7 (3.5) BS01 rna ? GO:0000028 ... P35997 27827794
    165 5tgm:d7 (3.5) BS02 ZN ? GO:0000028 ... P35997 27827794
    166 5tgm:d8 (3.5) BS01 rna ? GO:0000028 ... Q3E7X9 27827794
    167 5tgm:d9 (3.5) BS01 rna ? GO:0002181 ... P41057 27827794
    168 5tgm:d9 (3.5) BS02 ZN ? GO:0002181 ... P41057 27827794
    169 5tgm:e0 (3.5) BS01 rna ? GO:0002181 ... P0CX33 27827794
    170 5tgm:e1 (3.5) BS01 rna ? GO:0003735 ... P05759 27827794
    171 5tgm:l2 (3.5) BS01 rna ? GO:0002181 ... P0CX45 27827794
    172 5tgm:l2 (3.5) BS02 rna ? GO:0002181 ... P0CX45 27827794
    173 5tgm:l2 (3.5) BS03 MG ? GO:0002181 ... P0CX45 27827794
    174 5tgm:l3 (3.5) BS01 rna ? GO:0000027 ... P14126 27827794
    175 5tgm:l3 (3.5) BS02 OHX ? GO:0000027 ... P14126 27827794
    176 5tgm:l3 (3.5) BS03 OHX ? GO:0000027 ... P14126 27827794
    177 5tgm:l3 (3.5) BS04 OHX ? GO:0000027 ... P14126 27827794
    178 5tgm:l3 (3.5) BS05 MG ? GO:0000027 ... P14126 27827794
    179 5tgm:l4 (3.5) BS01 rna ? GO:0002181 ... P10664 27827794
    180 5tgm:l4 (3.5) BS02 rna ? GO:0002181 ... P10664 27827794
    181 5tgm:l5 (3.5) BS01 rna ? GO:0000027 ... P26321 27827794
    182 5tgm:l5 (3.5) BS02 rna ? GO:0000027 ... P26321 27827794
    183 5tgm:l5 (3.5) BS03 OHX ? GO:0000027 ... P26321 27827794
    184 5tgm:l5 (3.5) BS04 OHX ? GO:0000027 ... P26321 27827794
    185 5tgm:l5 (3.5) BS05 MG ? GO:0000027 ... P26321 27827794
    186 5tgm:l6 (3.5) BS01 rna ? GO:0000027 ... Q02326 27827794
    187 5tgm:l7 (3.5) BS01 rna ? GO:0000463 ... P05737 27827794
    188 5tgm:l7 (3.5) BS02 rna ? GO:0000463 ... P05737 27827794
    189 5tgm:l7 (3.5) BS03 MG ? GO:0000463 ... P05737 27827794
    190 5tgm:l8 (3.5) BS01 rna ? GO:0000470 ... P17076 27827794
    191 5tgm:l8 (3.5) BS02 rna ? GO:0000470 ... P17076 27827794
    192 5tgm:l9 (3.5) BS01 rna ? GO:0002181 ... P05738 27827794
    193 5tgm:l9 (3.5) BS02 OHX ? GO:0002181 ... P05738 27827794
    194 5tgm:m0 (3.5) BS01 rna ? GO:0000027 ... P41805 27827794
    195 5tgm:m0 (3.5) BS02 rna ? GO:0000027 ... P41805 27827794
    196 5tgm:m0 (3.5) BS03 OHX ? GO:0000027 ... P41805 27827794
    197 5tgm:m0 (3.5) BS04 OHX ? GO:0000027 ... P41805 27827794
    198 5tgm:m1 (3.5) BS01 rna ? GO:0000027 ... Q3E757 27827794
    199 5tgm:m1 (3.5) BS02 rna ? GO:0000027 ... Q3E757 27827794
    200 5tgm:m2 (3.5) BS01 rna ? GO:0000027 ... P0CX53 27827794
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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