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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5t5h:I (2.54) BS01 rna ? GO:0003723 ... Q4DZP2 27791004
    2 5t5h:I (2.54) BS02 rna ? GO:0003723 ... Q4DZP2 27791004
    3 5t5h:L (2.54) BS01 rna ? GO:0003735 ... Q4CNF4 27791004
    4 5t5h:L (2.54) BS02 rna ? GO:0003735 ... Q4CNF4 27791004
    5 5t5h:N (2.54) BS01 rna ? GO:0003723 ... Q4E661 27791004
    6 5t5h:N (2.54) BS02 rna ? GO:0003723 ... Q4E661 27791004
    7 5t5h:O (2.54) BS01 rna ? GO:0003729 ... V5DCT1 27791004
    8 5t5h:O (2.54) BS02 rna ? GO:0003729 ... V5DCT1 27791004
    9 5t5h:O (2.54) BS03 rna ? GO:0003729 ... V5DCT1 27791004
    10 5t5h:O (2.54) BS04 rna ? GO:0003729 ... V5DCT1 27791004
    11 5t5h:P (2.54) BS01 rna ? GO:0003723 ... Q4DQ35 27791004
    12 5t5h:P (2.54) BS02 rna ? GO:0003723 ... Q4DQ35 27791004
    13 5t5h:Q (2.54) BS01 rna ? GO:0002181 ... Q4CTG9 27791004
    14 5t5h:Q (2.54) BS02 rna ? GO:0002181 ... Q4CTG9 27791004
    15 5t5h:Q (2.54) BS03 rna ? GO:0002181 ... Q4CTG9 27791004
    16 5t5h:R (2.54) BS01 rna ? GO:0002181 ... Q4DC23 27791004
    17 5t5h:R (2.54) BS02 rna ? GO:0002181 ... Q4DC23 27791004
    18 5t5h:R (2.54) BS03 rna ? GO:0002181 ... Q4DC23 27791004
    19 5t5h:R (2.54) BS04 rna ? GO:0002181 ... Q4DC23 27791004
    20 5t5h:R (2.54) BS05 MG ? GO:0002181 ... Q4DC23 27791004
    21 5t5h:S (2.54) BS01 rna ? GO:0003735 ... Q4DZ31 27791004
    22 5t5h:S (2.54) BS02 rna ? GO:0003735 ... Q4DZ31 27791004
    23 5t5h:S (2.54) BS03 rna ? GO:0003735 ... Q4DZ31 27791004
    24 5t5h:T (2.54) BS01 rna ? GO:0003723 ... Q9BMP1 27791004
    25 5t5h:T (2.54) BS02 rna ? GO:0003723 ... Q9BMP1 27791004
    26 5t5h:T (2.54) BS03 rna ? GO:0003723 ... Q9BMP1 27791004
    27 5t5h:T (2.54) BS04 rna ? GO:0003723 ... Q9BMP1 27791004
    28 5t5h:U (2.54) BS01 rna ? GO:0003735 ... Q4DED2 27791004
    29 5t5h:U (2.54) BS02 rna ? GO:0003735 ... Q4DED2 27791004
    30 5t5h:U (2.54) BS03 rna ? GO:0003735 ... Q4DED2 27791004
    31 5t5h:V (2.54) BS01 rna ? GO:0003735 ... Q4DZN3 27791004
    32 5t5h:W (2.54) BS01 rna ? GO:0003735 ... Q4E4R0 27791004
    33 5t5h:W (2.54) BS02 rna ? GO:0003735 ... Q4E4R0 27791004
    34 5t5h:X (2.54) BS01 rna ? GO:0003735 ... Q4E2Y1 27791004
    35 5t5h:X (2.54) BS02 rna ? GO:0003735 ... Q4E2Y1 27791004
    36 5t5h:X (2.54) BS03 rna ? GO:0003735 ... Q4E2Y1 27791004
    37 5t5h:Y (2.54) BS01 rna ? N/A Q4E078 27791004
    38 5t5h:Y (2.54) BS02 rna ? N/A Q4E078 27791004
    39 5t5h:Y (2.54) BS03 rna ? N/A Q4E078 27791004
    40 5t5h:Z (2.54) BS01 rna ? GO:0003723 ... Q4DG45 27791004
    41 5t5h:Z (2.54) BS02 rna ? GO:0003723 ... Q4DG45 27791004
    42 5t5h:a (2.54) BS01 rna ? GO:0003735 ... Q9U4H7 27791004
    43 5t5h:a (2.54) BS02 rna ? GO:0003735 ... Q9U4H7 27791004
    44 5t5h:b (2.54) BS01 rna ? GO:0003735 ... Q4E4Q8 27791004
    45 5t5h:b (2.54) BS02 rna ? GO:0003735 ... Q4E4Q8 27791004
    46 5t5h:c (2.54) BS01 rna ? GO:0003735 ... O00822 27791004
    47 5t5h:d (2.54) BS01 rna ? GO:0003735 ... Q4CPD8 27791004
    48 5t5h:d (2.54) BS02 rna ? GO:0003735 ... Q4CPD8 27791004
    49 5t5h:e (2.54) BS01 rna ? GO:0002181 ... Q4DPQ8 27791004
    50 5t5h:e (2.54) BS02 rna ? GO:0002181 ... Q4DPQ8 27791004
    51 5t5h:e (2.54) BS03 rna ? GO:0002181 ... Q4DPQ8 27791004
    52 5t5h:f (2.54) BS01 rna ? GO:0003735 ... V5B599 27791004
    53 5t5h:f (2.54) BS02 rna ? GO:0003735 ... V5B599 27791004
    54 5t5h:f (2.54) BS03 rna ? GO:0003735 ... V5B599 27791004
    55 5t5h:f (2.54) BS04 rna ? GO:0003735 ... V5B599 27791004
    56 5t5h:g (2.54) BS01 rna ? GO:0003723 ... Q4DIC9 27791004
    57 5t5h:g (2.54) BS02 rna ? GO:0003723 ... Q4DIC9 27791004
    58 5t5h:h (2.54) BS01 rna ? GO:0002181 ... V5C333 27791004
    59 5t5h:h (2.54) BS02 rna ? GO:0002181 ... V5C333 27791004
    60 5t5h:h (2.54) BS03 rna ? GO:0002181 ... V5C333 27791004
    61 5t5h:h (2.54) BS04 rna ? GO:0002181 ... V5C333 27791004
    62 5t5h:i (2.54) BS01 rna ? GO:0003735 ... Q4D1H8 27791004
    63 5t5h:j (2.54) BS01 rna ? GO:0003735 ... Q4DB26 27791004
    64 5t5h:j (2.54) BS02 rna ? GO:0003735 ... Q4DB26 27791004
    65 5t5h:j (2.54) BS03 rna ? GO:0003735 ... Q4DB26 27791004
    66 5t5h:k (2.54) BS01 rna ? GO:0000463 ... Q4E2E0 27791004
    67 5t5h:k (2.54) BS02 rna ? GO:0000463 ... Q4E2E0 27791004
    68 5t5h:l (2.54) BS01 rna ? GO:0002181 ... Q4E581 27791004
    69 5t5h:l (2.54) BS02 rna ? GO:0002181 ... Q4E581 27791004
    70 5t5h:l (2.54) BS03 rna ? GO:0002181 ... Q4E581 27791004
    71 5t5h:m (2.54) BS01 rna ? GO:0003735 ... V5BDJ2 27791004
    72 5t5h:m (2.54) BS02 rna ? GO:0003735 ... V5BDJ2 27791004
    73 5t5h:n (2.54) BS01 rna ? GO:0003723 ... Q4DXW6 27791004
    74 5t5h:n (2.54) BS02 rna ? GO:0003723 ... Q4DXW6 27791004
    75 5t5h:n (2.54) BS03 rna ? GO:0003723 ... Q4DXW6 27791004
    76 5t5h:n (2.54) BS04 ZN ? GO:0003723 ... Q4DXW6 27791004
    77 5t5h:o (2.54) BS01 rna ? GO:0003735 ... Q4DAV9 27791004
    78 5t5h:o (2.54) BS02 rna ? GO:0003735 ... Q4DAV9 27791004
    79 5t5h:o (2.54) BS03 rna ? GO:0003735 ... Q4DAV9 27791004
    80 5t5h:o (2.54) BS04 ZN ? GO:0003735 ... Q4DAV9 27791004
    81 5t5h:p (2.54) BS01 rna ? GO:0003735 ... Q4DQ60 27791004
    82 5t5h:p (2.54) BS02 rna ? GO:0003735 ... Q4DQ60 27791004
    83 5t5h:p (2.54) BS03 rna ? GO:0003735 ... Q4DQ60 27791004
    84 5t5h:q (2.54) BS01 rna ? GO:0003735 ... Q4DVC6 27791004
    85 5t5h:q (2.54) BS02 rna ? GO:0003735 ... Q4DVC6 27791004
    86 5t5h:q (2.54) BS03 rna ? GO:0003735 ... Q4DVC6 27791004
    87 5t5h:r (2.54) BS01 rna ? GO:0003723 ... Q4CQW2 27791004
    88 5t5h:r (2.54) BS02 rna ? GO:0003723 ... Q4CQW2 27791004
    89 5t5h:r (2.54) BS03 rna ? GO:0003723 ... Q4CQW2 27791004
    90 5t5h:t (2.54) BS01 rna ? GO:0003735 ... Q4CV79 27791004
    91 5t5h:t (2.54) BS02 rna ? GO:0003735 ... Q4CV79 27791004
    92 5t5h:t (2.54) BS03 ZN ? GO:0003735 ... Q4CV79 27791004
    93 5t5h:u (2.54) BS01 rna ? GO:0003735 ... Q4CU61 27791004
    94 5t5h:u (2.54) BS02 rna ? GO:0003735 ... Q4CU61 27791004
    95 5t5h:u (2.54) BS03 rna ? GO:0003735 ... Q4CU61 27791004
    96 5t5h:v (2.54) BS01 rna ? GO:0003735 ... Q4DIV9 27791004
    97 5t5h:v (2.54) BS02 rna ? GO:0003735 ... Q4DIV9 27791004
    98 5t5h:w (2.54) BS01 rna ? GO:0000463 ... Q4DNZ7 27791004
    99 5t5h:w (2.54) BS02 rna ? GO:0000463 ... Q4DNZ7 27791004
    100 5t5h:x (2.54) BS01 rna ? N/A Q9BMP0 27791004
    101 5t5h:x (2.54) BS02 rna ? N/A Q9BMP0 27791004
    102 5t5h:x (2.54) BS03 rna ? N/A Q9BMP0 27791004
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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