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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5oy7:A (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    2 5oy7:A (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    3 5oy7:B (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    4 5oy7:B (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    5 5oy7:C (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    6 5oy7:C (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    7 5oy7:D (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    8 5oy7:D (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    9 5oy7:E (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    10 5oy7:E (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    11 5oy7:F (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    12 5oy7:F (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    13 5oy7:G (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    14 5oy7:G (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    15 5oy7:H (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    16 5oy7:H (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    17 5oy7:I (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    18 5oy7:I (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    19 5oy7:J (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    20 5oy7:J (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    21 5oy7:K (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    22 5oy7:K (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    23 5oy7:L (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    24 5oy7:L (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    25 5oy7:M (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    26 5oy7:M (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    27 5oy7:N (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    28 5oy7:N (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    29 5oy7:O (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    30 5oy7:O (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    31 5oy7:P (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    32 5oy7:P (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    33 5oy7:Q (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    34 5oy7:Q (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    35 5oy7:R (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    36 5oy7:R (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    37 5oy7:S (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    38 5oy7:S (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    39 5oy7:T (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    40 5oy7:T (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    41 5oy7:U (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    42 5oy7:U (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    43 5oy7:V (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    44 5oy7:V (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    45 5oy7:W (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    46 5oy7:W (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    47 5oy7:X (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    48 5oy7:X (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    49 5oy7:Y (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    50 5oy7:Y (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    51 5oy7:Z (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    52 5oy7:Z (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    53 5oy7:a (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    54 5oy7:a (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    55 5oy7:b (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    56 5oy7:b (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    57 5oy7:c (5.774) BS01 dna ? GO:0000786 ... P84233 28893533
    58 5oy7:c (5.774) BS02 dna ? GO:0000786 ... P84233 28893533
    59 5oy7:d (5.774) BS01 dna ? GO:0000786 ... P62799 28893533
    60 5oy7:d (5.774) BS02 dna ? GO:0000786 ... P62799 28893533
    61 5oy7:e (5.774) BS01 dna ? GO:0000786 ... P06897 28893533
    62 5oy7:e (5.774) BS02 dna ? GO:0000786 ... P06897 28893533
    63 5oy7:f (5.774) BS01 dna ? GO:0000786 ... P02281 28893533
    64 5oy7:f (5.774) BS02 dna ? GO:0000786 ... P02281 28893533
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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