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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5oug:A (2.57) BS01 L0B N/A GO:0004888 ... N/A 29237730
    2 5oug:A (2.57) BS02 9Z0 N/A GO:0004888 ... N/A 29237730 PDBbind: -logKd/Ki=2.77, Kd=1703.44uM
    3 5oug:A (2.57) BS03 9Z0 N/A GO:0004888 ... N/A 29237730 PDBbind: -logKd/Ki=2.77, Kd=1703.44uM
    4 5oug:A (2.57) BS04 L0B N/A GO:0004888 ... N/A 29237730
    5 5oug:A (2.57) BS05 9Z0 N/A GO:0004888 ... N/A 29237730 PDBbind: -logKd/Ki=2.77, Kd=1703.44uM
    6 5oug:B (2.57) BS01 9Z0 N/A GO:0004888 ... N/A 29237730
    7 5oug:B (2.57) BS02 L0B N/A GO:0004888 ... N/A 29237730
    8 5oug:B (2.57) BS03 9Z0 N/A GO:0004888 ... N/A 29237730
    9 5oug:B (2.57) BS04 9Z0 N/A GO:0004888 ... N/A 29237730
    10 5oug:B (2.57) BS05 L0B N/A GO:0004888 ... N/A 29237730
    11 5oug:C (2.57) BS01 L0B N/A GO:0004888 ... N/A 29237730
    12 5oug:C (2.57) BS02 9Z0 N/A GO:0004888 ... N/A 29237730
    13 5oug:C (2.57) BS03 L0B N/A GO:0004888 ... N/A 29237730
    14 5oug:D (2.57) BS01 L0B N/A GO:0004888 ... N/A 29237730
    15 5oug:D (2.57) BS02 9Z0 N/A GO:0004888 ... N/A 29237730
    16 5oug:D (2.57) BS03 9Z0 N/A GO:0004888 ... N/A 29237730
    17 5oug:D (2.57) BS04 L0B N/A GO:0004888 ... N/A 29237730
    18 5oug:E (2.57) BS01 L0B N/A GO:0004888 ... N/A 29237730
    19 5oug:E (2.57) BS02 9Z0 N/A GO:0004888 ... N/A 29237730
    20 5oug:E (2.57) BS03 L0B N/A GO:0004888 ... N/A 29237730
    21 5oug:E (2.57) BS04 9Z0 N/A GO:0004888 ... N/A 29237730
    22 5oug:E (2.57) BS05 9Z0 N/A GO:0004888 ... N/A 29237730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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