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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ool:0 (3.06) BS01 rna ? GO:0003723 ... Q9BYC8 28892042
    2 5ool:0 (3.06) BS02 ZN ? GO:0003723 ... Q9BYC8 28892042
    3 5ool:1 (3.06) BS01 rna ? GO:0003735 ... O75394 28892042
    4 5ool:2 (3.06) BS01 rna ? GO:0003735 ... Q9BQ48 28892042
    5 5ool:3 (3.06) BS01 rna ? GO:0003735 ... Q9NZE8 28892042
    6 5ool:4 (3.06) BS01 rna ? GO:0003735 ... Q9P0J6 28892042
    7 5ool:4 (3.06) BS02 ZN ? GO:0003735 ... Q9P0J6 28892042
    8 5ool:5 (3.06) BS01 rna ? GO:0003723 ... Q9BZE1 28892042
    9 5ool:6 (3.06) BS01 rna ? GO:0005515 ... Q96DV4 28892042
    10 5ool:6 (3.06) BS02 rna ? GO:0005515 ... Q96DV4 28892042
    11 5ool:8 (3.06) BS01 rna ? GO:0003723 ... Q9NQ50 28892042
    12 5ool:9 (3.06) BS01 rna ? GO:0003723 ... Q8IXM3 28892042
    13 5ool:D (3.06) BS01 rna ? GO:0003723 ... Q5T653 28892042
    14 5ool:E (3.06) BS01 rna ? GO:0003723 ... P09001 28892042
    15 5ool:F (3.06) BS01 rna ? GO:0003723 ... Q9BYD3 28892042
    16 5ool:H (3.06) BS01 rna ? GO:0003723 ... Q9BYD2 28892042
    17 5ool:I (3.06) BS01 rna ? GO:0003723 ... Q7Z7H8 28892042
    18 5ool:I (3.06) BS02 peptide ? GO:0003723 ... Q7Z7H8 28892042
    19 5ool:J (3.06) BS01 rna ? GO:0003723 ... Q9Y3B7 28892042
    20 5ool:K (3.06) BS01 rna ? GO:0003723 ... Q9BYD1 28892042
    21 5ool:L (3.06) BS01 rna ? GO:0003723 ... Q6P1L8 28892042
    22 5ool:M (3.06) BS01 rna ? GO:0003723 ... Q9P015 28892042
    23 5ool:N (3.06) BS01 rna ? GO:0003735 ... Q9NX20 28892042
    24 5ool:N (3.06) BS02 peptide ? GO:0003735 ... Q9NX20 28892042
    25 5ool:O (3.06) BS01 rna ? GO:0003735 ... Q9NRX2 28892042
    26 5ool:P (3.06) BS01 rna ? GO:0003723 ... Q9H0U6 28892042
    27 5ool:P (3.06) BS02 rna ? GO:0003723 ... Q9H0U6 28892042
    28 5ool:Q (3.06) BS01 rna ? GO:0003735 ... P49406 28892042
    29 5ool:R (3.06) BS01 rna ? GO:0003723 ... Q9BYC9 28892042
    30 5ool:S (3.06) BS01 rna ? GO:0003723 ... Q7Z2W9 28892042
    31 5ool:T (3.06) BS01 rna ? GO:0003723 ... Q9NWU5 28892042
    32 5ool:U (3.06) BS01 rna ? GO:0001650 ... Q16540 28892042
    33 5ool:V (3.06) BS01 rna ? GO:0003723 ... Q96A35 28892042
    34 5ool:W (3.06) BS01 rna ? GO:0003723 ... Q9P0M9 28892042
    35 5ool:X (3.06) BS01 rna ? GO:0003723 ... Q13084 28892042
    36 5ool:Y (3.06) BS01 rna ? GO:0003674 ... Q9HD33 28892042
    37 5ool:Z (3.06) BS01 rna ? GO:0003735 ... Q8TCC3 28892042
    38 5ool:a (3.06) BS01 rna ? GO:0003723 ... Q9Y6G3 28892042
    39 5ool:b (3.06) BS01 rna ? GO:0003723 ... Q8N983 28892042
    40 5ool:c (3.06) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 28892042
    41 5ool:d (3.06) BS01 rna ? GO:0003723 ... Q9BRJ2 28892042
    42 5ool:f (3.06) BS01 rna ? GO:0005515 ... Q96GC5 28892042
    43 5ool:f (3.06) BS02 rna ? GO:0005515 ... Q96GC5 28892042
    44 5ool:g (3.06) BS01 rna ? GO:0003735 ... Q13405 28892042
    45 5ool:i (3.06) BS01 rna ? GO:0003735 ... Q4U2R6 28892042
    46 5ool:j (3.06) BS01 rna ? GO:0003735 ... Q86TS9 28892042
    47 5ool:o (3.06) BS01 rna ? GO:0003735 ... Q9BQC6 28892042
    48 5ool:o (3.06) BS02 MG ? GO:0003735 ... Q9BQC6 28892042
    49 5ool:r (3.06) BS01 rna ? GO:0003735 ... Q9NVS2 28892042
    50 5ool:r (3.06) BS02 ZN ? GO:0003735 ... Q9NVS2 28892042
    51 5ool:s (3.06) BS01 rna ? GO:0003723 ... Q9NP92 28892042
    52 5ool:u (3.06) BS01 rna ? GO:0005515 ... Q96EH3 28892042
    53 5ool:v (3.06) BS01 PNS ? GO:0000266 ... L0R8F8 28892042
    54 5ool:w (3.06) BS01 PNS ? GO:0000035 ... O14561 28892042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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