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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 292 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5on6:0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 29429877
    2 5on6:0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 29429877
    3 5on6:2 (3.1) BS01 rna ? GO:0002181 ... Q02753 29429877
    4 5on6:2 (3.1) BS02 rna ? GO:0002181 ... Q02753 29429877
    5 5on6:2 (3.1) BS03 OHX ? GO:0002181 ... Q02753 29429877
    6 5on6:5 (3.1) BS01 rna ? GO:0003735 ... P05749 29429877
    7 5on6:7 (3.1) BS01 rna ? N/A P04449 29429877
    8 5on6:7 (3.1) BS02 rna ? N/A P04449 29429877
    9 5on6:8 (3.1) BS01 rna ? GO:0003735 ... P04456 29429877
    10 5on6:8 (3.1) BS02 rna ? GO:0003735 ... P04456 29429877
    11 5on6:9 (3.1) BS01 rna ? GO:0002181 ... P05743 29429877
    12 5on6:9 (3.1) BS02 rna ? GO:0002181 ... P05743 29429877
    13 5on6:AA (3.1) BS01 rna ? GO:0002181 ... P0C2H6 29429877
    14 5on6:AB (3.1) BS01 rna ? GO:0002181 ... P02406 29429877
    15 5on6:AB (3.1) BS02 MG ? GO:0002181 ... P02406 29429877
    16 5on6:AB (3.1) BS03 MG ? GO:0002181 ... P02406 29429877
    17 5on6:AB (3.1) BS04 MG ? GO:0002181 ... P02406 29429877
    18 5on6:AC (3.1) BS01 rna ? GO:0002181 ... P05747 29429877
    19 5on6:AC (3.1) BS02 OHX ? GO:0002181 ... P05747 29429877
    20 5on6:AD (3.1) BS01 rna ? GO:0002181 ... P14120 29429877
    21 5on6:AE (3.1) BS01 rna ? GO:0002181 ... P0C2H8 29429877
    22 5on6:AE (3.1) BS02 OHX ? GO:0002181 ... P0C2H8 29429877
    23 5on6:AF (3.1) BS01 rna ? GO:0002181 ... P38061 29429877
    24 5on6:AF (3.1) BS02 OHX ? GO:0002181 ... P38061 29429877
    25 5on6:AF (3.1) BS03 MG ? GO:0002181 ... P38061 29429877
    26 5on6:AG (3.1) BS01 rna ? GO:0000027 ... P05744 29429877
    27 5on6:AG (3.1) BS02 OHX ? GO:0000027 ... P05744 29429877
    28 5on6:AH (3.1) BS01 rna ? GO:0002181 ... P87262 29429877
    29 5on6:AI (3.1) BS01 rna ? GO:0000463 ... P0CX84 29429877
    30 5on6:AI (3.1) BS02 rna ? GO:0000463 ... P0CX84 29429877
    31 5on6:AJ (3.1) BS01 rna ? GO:0002181 ... P05745 29429877
    32 5on6:AK (3.1) BS01 rna ? GO:0000448 ... P49166 29429877
    33 5on6:AK (3.1) BS02 rna ? GO:0000448 ... P49166 29429877
    34 5on6:AK (3.1) BS03 OHX ? GO:0000448 ... P49166 29429877
    35 5on6:AK (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    36 5on6:AK (3.1) BS05 OHX ? GO:0000448 ... P49166 29429877
    37 5on6:AL (3.1) BS01 rna ? GO:0002181 ... P49167 29429877
    38 5on6:AM (3.1) BS01 rna ? GO:0002181 ... P04650 29429877
    39 5on6:AM (3.1) BS02 rna ? GO:0002181 ... P04650 29429877
    40 5on6:AM (3.1) BS03 OHX ? GO:0002181 ... P04650 29429877
    41 5on6:AN (3.1) BS01 rna ? GO:0003735 ... P0CH08 29429877
    42 5on6:AN (3.1) BS02 ZN ? GO:0003735 ... P0CH08 29429877
    43 5on6:AP (3.1) BS01 rna ? GO:0002181 ... P0CX27 29429877
    44 5on6:AP (3.1) BS02 ZN ? GO:0002181 ... P0CX27 29429877
    45 5on6:AP (3.1) BS03 OHX ? GO:0002181 ... P0CX27 29429877
    46 5on6:AQ (3.1) BS01 rna ? GO:0002181 ... P0CX25 29429877
    47 5on6:AQ (3.1) BS02 ZN ? GO:0002181 ... P0CX25 29429877
    48 5on6:B (3.1) BS01 rna ? GO:0003735 ... P32905 29429877
    49 5on6:C (3.1) BS01 rna ? GO:0003735 ... P33442 29429877
    50 5on6:CD (3.1) BS01 rna ? GO:0002181 ... P0CX45 29429877
    51 5on6:CD (3.1) BS02 rna ? GO:0002181 ... P0CX45 29429877
    52 5on6:CD (3.1) BS03 MG ? GO:0002181 ... P0CX45 29429877
    53 5on6:CD (3.1) BS04 MG ? GO:0002181 ... P0CX45 29429877
    54 5on6:CD (3.1) BS05 MG ? GO:0002181 ... P0CX45 29429877
    55 5on6:CE (3.1) BS01 rna ? GO:0000027 ... P14126 29429877
    56 5on6:CE (3.1) BS02 OHX ? GO:0000027 ... P14126 29429877
    57 5on6:CE (3.1) BS03 OHX ? GO:0000027 ... P14126 29429877
    58 5on6:CE (3.1) BS04 OHX ? GO:0000027 ... P14126 29429877
    59 5on6:CE (3.1) BS05 MG ? GO:0000027 ... P14126 29429877
    60 5on6:CE (3.1) BS06 MG ? GO:0000027 ... P14126 29429877
    61 5on6:CE (3.1) BS07 MG ? GO:0000027 ... P14126 29429877
    62 5on6:CF (3.1) BS01 rna ? GO:0002181 ... P10664 29429877
    63 5on6:CF (3.1) BS02 rna ? GO:0002181 ... P10664 29429877
    64 5on6:CF (3.1) BS03 OHX ? GO:0002181 ... P10664 29429877
    65 5on6:CF (3.1) BS04 OHX ? GO:0002181 ... P10664 29429877
    66 5on6:CG (3.1) BS01 rna ? GO:0000027 ... P26321 29429877
    67 5on6:CG (3.1) BS02 rna ? GO:0000027 ... P26321 29429877
    68 5on6:CG (3.1) BS03 OHX ? GO:0000027 ... P26321 29429877
    69 5on6:CG (3.1) BS04 MG ? GO:0000027 ... P26321 29429877
    70 5on6:CH (3.1) BS01 rna ? GO:0000027 ... Q02326 29429877
    71 5on6:CI (3.1) BS01 rna ? GO:0000463 ... P05737 29429877
    72 5on6:CI (3.1) BS02 rna ? GO:0000463 ... P05737 29429877
    73 5on6:CI (3.1) BS03 OHX ? GO:0000463 ... P05737 29429877
    74 5on6:CJ (3.1) BS01 rna ? GO:0000470 ... P17076 29429877
    75 5on6:CJ (3.1) BS02 rna ? GO:0000470 ... P17076 29429877
    76 5on6:CK (3.1) BS01 rna ? GO:0002181 ... P05738 29429877
    77 5on6:CK (3.1) BS02 OHX ? GO:0002181 ... P05738 29429877
    78 5on6:CL (3.1) BS01 rna ? GO:0000027 ... P41805 29429877
    79 5on6:CL (3.1) BS02 rna ? GO:0000027 ... P41805 29429877
    80 5on6:CM (3.1) BS01 rna ? GO:0000027 ... Q3E757 29429877
    81 5on6:CM (3.1) BS02 rna ? GO:0000027 ... Q3E757 29429877
    82 5on6:CM (3.1) BS03 OHX ? GO:0000027 ... Q3E757 29429877
    83 5on6:CN (3.1) BS01 rna ? GO:0002181 ... Q12690 29429877
    84 5on6:CN (3.1) BS02 rna ? GO:0002181 ... Q12690 29429877
    85 5on6:CO (3.1) BS01 rna ? GO:0000027 ... P36105 29429877
    86 5on6:CP (3.1) BS01 rna ? GO:0002181 ... P05748 29429877
    87 5on6:CP (3.1) BS02 rna ? GO:0002181 ... P05748 29429877
    88 5on6:CP (3.1) BS03 OHX ? GO:0002181 ... P05748 29429877
    89 5on6:CP (3.1) BS04 MG ? GO:0002181 ... P05748 29429877
    90 5on6:CQ (3.1) BS01 rna ? GO:0000470 ... P26784 29429877
    91 5on6:CQ (3.1) BS02 MG ? GO:0000470 ... P26784 29429877
    92 5on6:CR (3.1) BS01 rna ? GO:0000448 ... P05740 29429877
    93 5on6:CR (3.1) BS02 rna ? GO:0000448 ... P05740 29429877
    94 5on6:CS (3.1) BS01 rna ? GO:0002181 ... P0CX49 29429877
    95 5on6:CT (3.1) BS01 rna ? GO:0002181 ... P0CX82 29429877
    96 5on6:CT (3.1) BS02 rna ? GO:0002181 ... P0CX82 29429877
    97 5on6:CU (3.1) BS01 rna ? GO:0002181 ... P0CX23 29429877
    98 5on6:CU (3.1) BS02 rna ? GO:0002181 ... P0CX23 29429877
    99 5on6:CV (3.1) BS01 rna ? GO:0002181 ... Q02753 29429877
    100 5on6:CV (3.1) BS02 rna ? GO:0002181 ... Q02753 29429877
    101 5on6:CV (3.1) BS03 MG ? GO:0002181 ... Q02753 29429877
    102 5on6:CV (3.1) BS04 OHX ? GO:0002181 ... Q02753 29429877
    103 5on6:CW (3.1) BS01 rna ? GO:0003735 ... P05749 29429877
    104 5on6:CX (3.1) BS01 rna ? GO:0002181 ... P0CX41 29429877
    105 5on6:CX (3.1) BS02 rna ? GO:0002181 ... P0CX41 29429877
    106 5on6:CX (3.1) BS03 OHX ? GO:0002181 ... P0CX41 29429877
    107 5on6:CX (3.1) BS04 MG ? GO:0002181 ... P0CX41 29429877
    108 5on6:CY (3.1) BS01 rna ? N/A P04449 29429877
    109 5on6:CY (3.1) BS02 rna ? N/A P04449 29429877
    110 5on6:CZ (3.1) BS01 rna ? GO:0003735 ... P04456 29429877
    111 5on6:CZ (3.1) BS02 rna ? GO:0003735 ... P04456 29429877
    112 5on6:D (3.1) BS01 rna ? GO:0003723 ... P25443 29429877
    113 5on6:DA (3.1) BS01 rna ? GO:0002181 ... P05743 29429877
    114 5on6:DA (3.1) BS02 rna ? GO:0002181 ... P05743 29429877
    115 5on6:DA (3.1) BS03 OHX ? GO:0002181 ... P05743 29429877
    116 5on6:DB (3.1) BS01 rna ? GO:0002181 ... P0C2H6 29429877
    117 5on6:DC (3.1) BS01 rna ? GO:0002181 ... P02406 29429877
    118 5on6:DD (3.1) BS01 rna ? GO:0002181 ... P05747 29429877
    119 5on6:DD (3.1) BS02 OHX ? GO:0002181 ... P05747 29429877
    120 5on6:DE (3.1) BS01 rna ? GO:0002181 ... P14120 29429877
    121 5on6:DF (3.1) BS01 rna ? GO:0002181 ... P0C2H8 29429877
    122 5on6:DG (3.1) BS01 rna ? GO:0002181 ... P38061 29429877
    123 5on6:DH (3.1) BS01 rna ? GO:0000027 ... P05744 29429877
    124 5on6:DH (3.1) BS02 OHX ? GO:0000027 ... P05744 29429877
    125 5on6:DH (3.1) BS03 MG ? GO:0000027 ... P05744 29429877
    126 5on6:DI (3.1) BS01 rna ? GO:0002181 ... P87262 29429877
    127 5on6:DI (3.1) BS02 MG ? GO:0002181 ... P87262 29429877
    128 5on6:DJ (3.1) BS01 rna ? GO:0000463 ... P0CX84 29429877
    129 5on6:DJ (3.1) BS02 rna ? GO:0000463 ... P0CX84 29429877
    130 5on6:DK (3.1) BS01 rna ? GO:0002181 ... P05745 29429877
    131 5on6:DL (3.1) BS01 rna ? GO:0000448 ... P49166 29429877
    132 5on6:DL (3.1) BS02 rna ? GO:0000448 ... P49166 29429877
    133 5on6:DL (3.1) BS03 OHX ? GO:0000448 ... P49166 29429877
    134 5on6:DL (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    135 5on6:DM (3.1) BS01 rna ? GO:0002181 ... P49167 29429877
    136 5on6:DN (3.1) BS01 rna ? GO:0002181 ... P04650 29429877
    137 5on6:DN (3.1) BS02 rna ? GO:0002181 ... P04650 29429877
    138 5on6:DO (3.1) BS01 rna ? GO:0003735 ... P0CH08 29429877
    139 5on6:DO (3.1) BS02 MG ? GO:0003735 ... P0CH08 29429877
    140 5on6:DO (3.1) BS03 ZN ? GO:0003735 ... P0CH08 29429877
    141 5on6:DQ (3.1) BS01 rna ? GO:0002181 ... P0CX27 29429877
    142 5on6:DQ (3.1) BS02 OHX ? GO:0002181 ... P0CX27 29429877
    143 5on6:DQ (3.1) BS03 ZN ? GO:0002181 ... P0CX27 29429877
    144 5on6:DR (3.1) BS01 rna ? GO:0002181 ... P0CX25 29429877
    145 5on6:DR (3.1) BS02 rna ? GO:0002181 ... P0CX25 29429877
    146 5on6:DR (3.1) BS03 ZN ? GO:0002181 ... P0CX25 29429877
    147 5on6:E (3.1) BS01 rna ? GO:0000054 ... P05750 29429877
    148 5on6:F (3.1) BS01 rna ? GO:0002181 ... P0CX35 29429877
    149 5on6:G (3.1) BS01 rna ? GO:0000028 ... P26783 29429877
    150 5on6:H (3.1) BS01 rna ? GO:0000462 ... P0CX37 29429877
    151 5on6:I (3.1) BS01 rna ? GO:0002181 ... P26786 29429877
    152 5on6:J (3.1) BS01 rna ? GO:0000462 ... P0CX39 29429877
    153 5on6:J (3.1) BS02 rna ? GO:0000462 ... P0CX39 29429877
    154 5on6:J (3.1) BS03 OHX ? GO:0000462 ... P0CX39 29429877
    155 5on6:K (3.1) BS01 rna ? GO:0000462 ... O13516 29429877
    156 5on6:L (3.1) BS01 rna ? GO:0000054 ... Q08745 29429877
    157 5on6:M (3.1) BS01 rna ? GO:0000028 ... P0CX47 29429877
    158 5on6:M (3.1) BS02 OHX ? GO:0000028 ... P0CX47 29429877
    159 5on6:N (3.1) BS01 rna ? GO:0003735 ... P48589 29429877
    160 5on6:O (3.1) BS01 rna ? GO:0000462 ... P05756 29429877
    161 5on6:O (3.1) BS02 rna ? GO:0000462 ... P05756 29429877
    162 5on6:O (3.1) BS03 OHX ? GO:0000462 ... P05756 29429877
    163 5on6:P (3.1) BS01 rna ? GO:0000028 ... P39516 29429877
    164 5on6:Q (3.1) BS01 rna ? GO:0000028 ... Q01855 29429877
    165 5on6:Q (3.1) BS02 rna ? GO:0000028 ... Q01855 29429877
    166 5on6:Q (3.1) BS03 OHX ? GO:0000028 ... Q01855 29429877
    167 5on6:R (3.1) BS01 rna ? GO:0000462 ... P0CX51 29429877
    168 5on6:S (3.1) BS01 rna ? GO:0000028 ... P14127 29429877
    169 5on6:T (3.1) BS01 rna ? GO:0000054 ... P0CX55 29429877
    170 5on6:T (3.1) BS02 MG ? GO:0000054 ... P0CX55 29429877
    171 5on6:U (3.1) BS01 rna ? GO:0000028 ... P07280 29429877
    172 5on6:V (3.1) BS01 rna ? GO:0000462 ... P38701 29429877
    173 5on6:X (3.1) BS01 rna ? GO:0002181 ... P0C0W1 29429877
    174 5on6:Y (3.1) BS01 rna ? GO:0000462 ... P0CX29 29429877
    175 5on6:Z (3.1) BS01 rna ? GO:0000462 ... P0CX31 29429877
    176 5on6:a (3.1) BS01 rna ? N/A Q3E792 29429877
    177 5on6:b (3.1) BS01 rna ? GO:0003735 ... P39939 29429877
    178 5on6:b (3.1) BS02 ZN ? GO:0003735 ... P39939 29429877
    179 5on6:c (3.1) BS01 rna ? GO:0000028 ... P35997 29429877
    180 5on6:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 29429877
    181 5on6:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 29429877
    182 5on6:c1 (3.1) BS02 OHX ? GO:0000028 ... P0CX47 29429877
    183 5on6:c2 (3.1) BS01 rna ? GO:0003735 ... P48589 29429877
    184 5on6:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 29429877
    185 5on6:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 29429877
    186 5on6:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 29429877
    187 5on6:c3 (3.1) BS04 OHX ? GO:0000462 ... P05756 29429877
    188 5on6:c4 (3.1) BS01 rna ? GO:0000028 ... P39516 29429877
    189 5on6:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 29429877
    190 5on6:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 29429877
    191 5on6:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 29429877
    192 5on6:c7 (3.1) BS01 rna ? GO:0000028 ... P14127 29429877
    193 5on6:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 29429877
    194 5on6:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 29429877
    195 5on6:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 29429877
    196 5on6:d (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 29429877
    197 5on6:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 29429877
    198 5on6:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 29429877
    199 5on6:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 29429877
    200 5on6:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 29429877
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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