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BioLiP
Download all results in tab-seperated text for 247 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5obm:C0 (3.4) BS01 rna ? GO:0000054 ... Q08745 29208708
    2 5obm:C1 (3.4) BS01 rna ? GO:0000028 ... P0CX47 29208708
    3 5obm:C2 (3.4) BS01 rna ? GO:0000028 ... P48589 29208708
    4 5obm:C3 (3.4) BS01 rna ? GO:0000462 ... P05756 29208708
    5 5obm:C3 (3.4) BS02 rna ? GO:0000462 ... P05756 29208708
    6 5obm:C4 (3.4) BS01 rna ? GO:0000028 ... P39516 29208708
    7 5obm:C5 (3.4) BS01 rna ? GO:0000028 ... Q01855 29208708
    8 5obm:C6 (3.4) BS01 rna ? GO:0000462 ... P0CX51 29208708
    9 5obm:C7 (3.4) BS01 rna ? GO:0000028 ... P02407 29208708
    10 5obm:C8 (3.4) BS01 rna ? GO:0000054 ... P0CX55 29208708
    11 5obm:C8 (3.4) BS02 MG ? GO:0000054 ... P0CX55 29208708
    12 5obm:C9 (3.4) BS01 rna ? GO:0000028 ... P07280 29208708
    13 5obm:D0 (3.4) BS01 rna ? GO:0000462 ... P38701 29208708
    14 5obm:D2 (3.4) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    15 5obm:D3 (3.4) BS01 rna ? GO:0000462 ... P0CX29 29208708
    16 5obm:D4 (3.4) BS01 rna ? GO:0000462 ... P0CX31 29208708
    17 5obm:D5 (3.4) BS01 rna ? N/A Q3E792 29208708
    18 5obm:D6 (3.4) BS01 rna ? GO:0003735 ... P39939 29208708
    19 5obm:D6 (3.4) BS02 ZN ? GO:0003735 ... P39939 29208708
    20 5obm:D7 (3.4) BS01 rna ? GO:0000028 ... P35997 29208708
    21 5obm:D8 (3.4) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    22 5obm:D9 (3.4) BS01 rna ? GO:0002181 ... P41057 29208708
    23 5obm:D9 (3.4) BS02 ZN ? GO:0002181 ... P41057 29208708
    24 5obm:E0 (3.4) BS01 rna ? GO:0002181 ... P0CX33 29208708
    25 5obm:E1 (3.4) BS01 rna ? GO:0003735 ... P05759 29208708
    26 5obm:L2 (3.4) BS01 rna ? GO:0002181 ... P0CX45 29208708
    27 5obm:L2 (3.4) BS02 rna ? GO:0002181 ... P0CX45 29208708
    28 5obm:L2 (3.4) BS03 MG ? GO:0002181 ... P0CX45 29208708
    29 5obm:L2 (3.4) BS04 MG ? GO:0002181 ... P0CX45 29208708
    30 5obm:L2 (3.4) BS05 MG ? GO:0002181 ... P0CX45 29208708
    31 5obm:L3 (3.4) BS01 rna ? GO:0000027 ... P14126 29208708
    32 5obm:L3 (3.4) BS02 LLL ? GO:0000027 ... P14126 29208708
    33 5obm:L4 (3.4) BS01 rna ? GO:0002181 ... P10664 29208708
    34 5obm:L4 (3.4) BS02 rna ? GO:0002181 ... P10664 29208708
    35 5obm:L5 (3.4) BS01 rna ? GO:0000027 ... P26321 29208708
    36 5obm:L5 (3.4) BS02 rna ? GO:0000027 ... P26321 29208708
    37 5obm:L6 (3.4) BS01 rna ? GO:0000027 ... Q02326 29208708
    38 5obm:L7 (3.4) BS01 rna ? GO:0000463 ... P05737 29208708
    39 5obm:L7 (3.4) BS02 rna ? GO:0000463 ... P05737 29208708
    40 5obm:L8 (3.4) BS01 rna ? GO:0000470 ... P17076 29208708
    41 5obm:L8 (3.4) BS02 rna ? GO:0000470 ... P17076 29208708
    42 5obm:L9 (3.4) BS01 rna ? GO:0002181 ... P05738 29208708
    43 5obm:M0 (3.4) BS01 rna ? GO:0000027 ... P41805 29208708
    44 5obm:M0 (3.4) BS02 rna ? GO:0000027 ... P41805 29208708
    45 5obm:M0 (3.4) BS03 MG ? GO:0000027 ... P41805 29208708
    46 5obm:M1 (3.4) BS01 rna ? GO:0000027 ... Q3E757 29208708
    47 5obm:M1 (3.4) BS02 rna ? GO:0000027 ... Q3E757 29208708
    48 5obm:M3 (3.4) BS01 rna ? GO:0002181 ... Q12690 29208708
    49 5obm:M3 (3.4) BS02 rna ? GO:0002181 ... Q12690 29208708
    50 5obm:M4 (3.4) BS01 rna ? GO:0000027 ... P36105 29208708
    51 5obm:M5 (3.4) BS01 rna ? GO:0002181 ... P05748 29208708
    52 5obm:M5 (3.4) BS02 rna ? GO:0002181 ... P05748 29208708
    53 5obm:M6 (3.4) BS01 rna ? GO:0000470 ... P26784 29208708
    54 5obm:M7 (3.4) BS01 rna ? GO:0000448 ... P05740 29208708
    55 5obm:M7 (3.4) BS02 rna ? GO:0000448 ... P05740 29208708
    56 5obm:M8 (3.4) BS01 rna ? GO:0002181 ... P0CX49 29208708
    57 5obm:M8 (3.4) BS02 MG ? GO:0002181 ... P0CX49 29208708
    58 5obm:M9 (3.4) BS01 rna ? GO:0002181 ... P0CX82 29208708
    59 5obm:M9 (3.4) BS02 rna ? GO:0002181 ... P0CX82 29208708
    60 5obm:N0 (3.4) BS01 rna ? GO:0002181 ... P0CX23 29208708
    61 5obm:N0 (3.4) BS02 rna ? GO:0002181 ... P0CX23 29208708
    62 5obm:N0 (3.4) BS03 MG ? GO:0002181 ... P0CX23 29208708
    63 5obm:N1 (3.4) BS01 rna ? GO:0002181 ... Q02753 29208708
    64 5obm:N1 (3.4) BS02 rna ? GO:0002181 ... Q02753 29208708
    65 5obm:N2 (3.4) BS01 rna ? GO:0003735 ... P05749 29208708
    66 5obm:N3 (3.4) BS01 rna ? GO:0002181 ... P0CX41 29208708
    67 5obm:N3 (3.4) BS02 rna ? GO:0002181 ... P0CX41 29208708
    68 5obm:N4 (3.4) BS01 rna ? GO:0002181 ... P04449 29208708
    69 5obm:N5 (3.4) BS01 rna ? GO:0003735 ... P04456 29208708
    70 5obm:N5 (3.4) BS02 rna ? GO:0003735 ... P04456 29208708
    71 5obm:N6 (3.4) BS01 rna ? GO:0002181 ... P05743 29208708
    72 5obm:N6 (3.4) BS02 rna ? GO:0002181 ... P05743 29208708
    73 5obm:N7 (3.4) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    74 5obm:N8 (3.4) BS01 rna ? GO:0002181 ... P02406 29208708
    75 5obm:N9 (3.4) BS01 rna ? GO:0002181 ... P05747 29208708
    76 5obm:O0 (3.4) BS01 rna ? GO:0002181 ... P14120 29208708
    77 5obm:O1 (3.4) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    78 5obm:O2 (3.4) BS01 rna ? GO:0002181 ... P38061 29208708
    79 5obm:O2 (3.4) BS02 MG ? GO:0002181 ... P38061 29208708
    80 5obm:O3 (3.4) BS01 rna ? GO:0000027 ... P05744 29208708
    81 5obm:O4 (3.4) BS01 rna ? GO:0002181 ... P87262 29208708
    82 5obm:O4 (3.4) BS02 ZN ? GO:0002181 ... P87262 29208708
    83 5obm:O5 (3.4) BS01 rna ? GO:0000463 ... P0CX84 29208708
    84 5obm:O5 (3.4) BS02 rna ? GO:0000463 ... P0CX84 29208708
    85 5obm:O6 (3.4) BS01 rna ? GO:0002181 ... P05745 29208708
    86 5obm:O7 (3.4) BS01 rna ? GO:0000448 ... P49166 29208708
    87 5obm:O7 (3.4) BS02 rna ? GO:0000448 ... P49166 29208708
    88 5obm:O7 (3.4) BS03 ZN ? GO:0000448 ... P49166 29208708
    89 5obm:O8 (3.4) BS01 rna ? GO:0002181 ... P49167 29208708
    90 5obm:O9 (3.4) BS01 rna ? GO:0002181 ... P04650 29208708
    91 5obm:O9 (3.4) BS02 rna ? GO:0002181 ... P04650 29208708
    92 5obm:Q0 (3.4) BS01 rna ? GO:0003735 ... P0CH08 29208708
    93 5obm:Q0 (3.4) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    94 5obm:Q2 (3.4) BS01 rna ? GO:0002181 ... P0CX27 29208708
    95 5obm:Q2 (3.4) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    96 5obm:Q3 (3.4) BS01 rna ? GO:0002181 ... P0CX25 29208708
    97 5obm:Q3 (3.4) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    98 5obm:S0 (3.4) BS01 rna ? GO:0003735 ... P32905 29208708
    99 5obm:S1 (3.4) BS01 rna ? GO:0003735 ... P33442 29208708
    100 5obm:S2 (3.4) BS01 rna ? GO:0003723 ... P25443 29208708
    101 5obm:S3 (3.4) BS01 rna ? GO:0000054 ... P05750 29208708
    102 5obm:S4 (3.4) BS01 rna ? GO:0002181 ... P0CX35 29208708
    103 5obm:S5 (3.4) BS01 rna ? GO:0000028 ... P26783 29208708
    104 5obm:S6 (3.4) BS01 rna ? GO:0000462 ... P0CX37 29208708
    105 5obm:S7 (3.4) BS01 rna ? GO:0002181 ... P26786 29208708
    106 5obm:S8 (3.4) BS01 rna ? GO:0000462 ... P0CX39 29208708
    107 5obm:S8 (3.4) BS02 rna ? GO:0000462 ... P0CX39 29208708
    108 5obm:S9 (3.4) BS01 rna ? GO:0000462 ... O13516 29208708
    109 5obm:SM (3.4) BS01 rna ? GO:0000723 ... P39015 29208708
    110 5obm:SM (3.4) BS02 rna ? GO:0000723 ... P39015 29208708
    111 5obm:SR (3.4) BS01 rna ? GO:0001965 ... P38011 29208708
    112 5obm:c0 (3.4) BS01 rna ? GO:0000054 ... Q08745 29208708
    113 5obm:c1 (3.4) BS01 rna ? GO:0000028 ... P0CX47 29208708
    114 5obm:c2 (3.4) BS01 rna ? GO:0000028 ... P48589 29208708
    115 5obm:c3 (3.4) BS01 rna ? GO:0000462 ... P05756 29208708
    116 5obm:c3 (3.4) BS02 rna ? GO:0000462 ... P05756 29208708
    117 5obm:c3 (3.4) BS03 MG ? GO:0000462 ... P05756 29208708
    118 5obm:c4 (3.4) BS01 rna ? GO:0000028 ... P39516 29208708
    119 5obm:c4 (3.4) BS02 MG ? GO:0000028 ... P39516 29208708
    120 5obm:c5 (3.4) BS01 rna ? GO:0000028 ... Q01855 29208708
    121 5obm:c6 (3.4) BS01 rna ? GO:0000462 ... P0CX51 29208708
    122 5obm:c7 (3.4) BS01 rna ? GO:0000028 ... P02407 29208708
    123 5obm:c8 (3.4) BS01 rna ? GO:0000054 ... P0CX55 29208708
    124 5obm:c8 (3.4) BS02 MG ? GO:0000054 ... P0CX55 29208708
    125 5obm:c9 (3.4) BS01 rna ? GO:0000028 ... P07280 29208708
    126 5obm:c9 (3.4) BS02 MG ? GO:0000028 ... P07280 29208708
    127 5obm:d0 (3.4) BS01 rna ? GO:0000462 ... P38701 29208708
    128 5obm:d1 (3.4) BS01 rna ? GO:0000447 ... P0C0V8 29208708
    129 5obm:d2 (3.4) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    130 5obm:d3 (3.4) BS01 rna ? GO:0000462 ... P0CX29 29208708
    131 5obm:d3 (3.4) BS02 MG ? GO:0000462 ... P0CX29 29208708
    132 5obm:d4 (3.4) BS01 rna ? GO:0000462 ... P0CX31 29208708
    133 5obm:d5 (3.4) BS01 rna ? N/A Q3E792 29208708
    134 5obm:d6 (3.4) BS01 rna ? GO:0003735 ... P39939 29208708
    135 5obm:d6 (3.4) BS02 ZN ? GO:0003735 ... P39939 29208708
    136 5obm:d7 (3.4) BS01 rna ? GO:0000028 ... P35997 29208708
    137 5obm:d7 (3.4) BS02 ZN ? GO:0000028 ... P35997 29208708
    138 5obm:d8 (3.4) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    139 5obm:d9 (3.4) BS01 rna ? GO:0002181 ... P41057 29208708
    140 5obm:d9 (3.4) BS02 ZN ? GO:0002181 ... P41057 29208708
    141 5obm:e0 (3.4) BS01 rna ? GO:0002181 ... P0CX33 29208708
    142 5obm:e1 (3.4) BS01 rna ? GO:0003735 ... P05759 29208708
    143 5obm:l2 (3.4) BS01 rna ? GO:0002181 ... P0CX45 29208708
    144 5obm:l2 (3.4) BS02 rna ? GO:0002181 ... P0CX45 29208708
    145 5obm:l2 (3.4) BS03 MG ? GO:0002181 ... P0CX45 29208708
    146 5obm:l2 (3.4) BS04 LLL ? GO:0002181 ... P0CX45 29208708
    147 5obm:l3 (3.4) BS01 rna ? GO:0000027 ... P14126 29208708
    148 5obm:l3 (3.4) BS02 MG ? GO:0000027 ... P14126 29208708
    149 5obm:l3 (3.4) BS03 MG ? GO:0000027 ... P14126 29208708
    150 5obm:l3 (3.4) BS04 MG ? GO:0000027 ... P14126 29208708
    151 5obm:l3 (3.4) BS05 MG ? GO:0000027 ... P14126 29208708
    152 5obm:l3 (3.4) BS06 LLL ? GO:0000027 ... P14126 29208708
    153 5obm:l4 (3.4) BS01 rna ? GO:0002181 ... P10664 29208708
    154 5obm:l4 (3.4) BS02 rna ? GO:0002181 ... P10664 29208708
    155 5obm:l5 (3.4) BS01 rna ? GO:0000027 ... P26321 29208708
    156 5obm:l5 (3.4) BS02 rna ? GO:0000027 ... P26321 29208708
    157 5obm:l6 (3.4) BS01 rna ? GO:0000027 ... Q02326 29208708
    158 5obm:l7 (3.4) BS01 rna ? GO:0000463 ... P05737 29208708
    159 5obm:l7 (3.4) BS02 rna ? GO:0000463 ... P05737 29208708
    160 5obm:l8 (3.4) BS01 rna ? GO:0000470 ... P17076 29208708
    161 5obm:l8 (3.4) BS02 rna ? GO:0000470 ... P17076 29208708
    162 5obm:l9 (3.4) BS01 rna ? GO:0002181 ... P05738 29208708
    163 5obm:l9 (3.4) BS02 MG ? GO:0002181 ... P05738 29208708
    164 5obm:l9 (3.4) BS03 MG ? GO:0002181 ... P05738 29208708
    165 5obm:m0 (3.4) BS01 rna ? GO:0000027 ... P41805 29208708
    166 5obm:m0 (3.4) BS02 rna ? GO:0000027 ... P41805 29208708
    167 5obm:m0 (3.4) BS03 MG ? GO:0000027 ... P41805 29208708
    168 5obm:m0 (3.4) BS04 MG ? GO:0000027 ... P41805 29208708
    169 5obm:m1 (3.4) BS01 rna ? GO:0000027 ... Q3E757 29208708
    170 5obm:m1 (3.4) BS02 rna ? GO:0000027 ... Q3E757 29208708
    171 5obm:m2 (3.4) BS01 rna N/A N/A N/A 29208708
    172 5obm:m3 (3.4) BS01 rna ? GO:0002181 ... Q12690 29208708
    173 5obm:m3 (3.4) BS02 rna ? GO:0002181 ... Q12690 29208708
    174 5obm:m4 (3.4) BS01 rna ? GO:0000027 ... P36105 29208708
    175 5obm:m5 (3.4) BS01 rna ? GO:0002181 ... P05748 29208708
    176 5obm:m5 (3.4) BS02 rna ? GO:0002181 ... P05748 29208708
    177 5obm:m5 (3.4) BS03 MG ? GO:0002181 ... P05748 29208708
    178 5obm:m6 (3.4) BS01 rna ? GO:0000470 ... P26784 29208708
    179 5obm:m6 (3.4) BS02 MG ? GO:0000470 ... P26784 29208708
    180 5obm:m6 (3.4) BS03 MG ? GO:0000470 ... P26784 29208708
    181 5obm:m7 (3.4) BS01 rna ? GO:0000448 ... P05740 29208708
    182 5obm:m7 (3.4) BS02 rna ? GO:0000448 ... P05740 29208708
    183 5obm:m7 (3.4) BS03 MG ? GO:0000448 ... P05740 29208708
    184 5obm:m8 (3.4) BS01 rna ? GO:0002181 ... P0CX49 29208708
    185 5obm:m9 (3.4) BS01 rna ? GO:0002181 ... P0CX82 29208708
    186 5obm:m9 (3.4) BS02 rna ? GO:0002181 ... P0CX82 29208708
    187 5obm:m9 (3.4) BS03 MG ? GO:0002181 ... P0CX82 29208708
    188 5obm:n0 (3.4) BS01 rna ? GO:0002181 ... P0CX23 29208708
    189 5obm:n0 (3.4) BS02 rna ? GO:0002181 ... P0CX23 29208708
    190 5obm:n1 (3.4) BS01 rna ? GO:0002181 ... Q02753 29208708
    191 5obm:n1 (3.4) BS02 rna ? GO:0002181 ... Q02753 29208708
    192 5obm:n2 (3.4) BS01 rna ? GO:0003735 ... P05749 29208708
    193 5obm:n3 (3.4) BS01 rna ? GO:0002181 ... P0CX41 29208708
    194 5obm:n4 (3.4) BS01 rna ? N/A P04449 29208708
    195 5obm:n4 (3.4) BS02 rna ? N/A P04449 29208708
    196 5obm:n5 (3.4) BS01 rna ? GO:0003735 ... P04456 29208708
    197 5obm:n5 (3.4) BS02 rna ? GO:0003735 ... P04456 29208708
    198 5obm:n6 (3.4) BS01 rna ? GO:0002181 ... P05743 29208708
    199 5obm:n6 (3.4) BS02 rna ? GO:0002181 ... P05743 29208708
    200 5obm:n7 (3.4) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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