Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o9z:A (4.5) BS01 rna ? GO:0000244 ... Q6P2Q9 28781166
    2 5o9z:A (4.5) BS02 rna ? GO:0000244 ... Q6P2Q9 28781166
    3 5o9z:A (4.5) BS03 rna ? GO:0000244 ... Q6P2Q9 28781166
    4 5o9z:C (4.5) BS01 rna 3.6.4.13 GO:0000354 ... O75643 28781166
    5 5o9z:E (4.5) BS01 rna ? GO:0000244 ... O43395 28781166
    6 5o9z:F (4.5) BS01 rna ? GO:0000375 ... O43172 28781166
    7 5o9z:G (4.5) BS01 rna ? GO:0000244 ... O94906 28781166
    8 5o9z:H (4.5) BS01 rna ? GO:0000244 ... Q8WWY3 28781166
    9 5o9z:H (4.5) BS02 rna ? GO:0000244 ... Q8WWY3 28781166
    10 5o9z:J (4.5) BS01 rna ? GO:0000245 ... P83876 28781166
    11 5o9z:L (4.5) BS01 peptide ? GO:0000381 ... Q2TAY7 28781166
    12 5o9z:N (4.5) BS01 rna ? GO:0000398 ... Q96NC0 28781166
    13 5o9z:O (4.5) BS01 rna ? GO:0000398 ... P55769 28781166
    14 5o9z:W (4.5) BS01 rna ? GO:0000243 ... P62318 28781166
    15 5o9z:a (4.5) BS01 rna ? GO:0000245 ... P62316 28781166
    16 5o9z:e (4.5) BS01 rna ? GO:0000243 ... P62318 28781166
    17 5o9z:f (4.5) BS01 rna ? GO:0000387 ... P14678 28781166
    18 5o9z:g (4.5) BS01 rna ? GO:0000243 ... P62314 28781166
    19 5o9z:h (4.5) BS01 rna ? GO:0000245 ... P62316 28781166
    20 5o9z:i (4.5) BS01 rna ? GO:0000387 ... P62306 28781166
    21 5o9z:j (4.5) BS01 rna ? GO:0000245 ... P62304 28781166
    22 5o9z:k (4.5) BS01 rna ? GO:0000245 ... P62308 28781166
    23 5o9z:n (4.5) BS01 rna ? GO:0000243 ... P62314 28781166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417