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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5nrl:3 (7.2) BS01 rna ? GO:0000290 ... P57743 28530653
    2 5nrl:8 (7.2) BS01 rna ? GO:0000398 ... P47093 28530653
    3 5nrl:A (7.2) BS01 rna ? GO:0000244 ... P33334 28530653
    4 5nrl:A (7.2) BS02 rna ? GO:0000244 ... P33334 28530653
    5 5nrl:A (7.2) BS03 rna ? GO:0000244 ... P33334 28530653
    6 5nrl:B (7.2) BS01 rna 3.6.4.13 GO:0000388 ... P32639 28530653
    7 5nrl:C (7.2) BS01 rna ? GO:0000244 ... P36048 28530653
    8 5nrl:C (7.2) BS02 GTP ? GO:0000244 ... P36048 28530653
    9 5nrl:D (7.2) BS01 rna ? GO:0000398 ... Q06819 28530653
    10 5nrl:D (7.2) BS02 rna ? GO:0000398 ... Q06819 28530653
    11 5nrl:E (7.2) BS01 rna ? GO:0000398 ... Q12420 28530653
    12 5nrl:F (7.2) BS01 rna ? GO:0000244 ... P49704 28530653
    13 5nrl:F (7.2) BS02 rna ? GO:0000244 ... P49704 28530653
    14 5nrl:G (7.2) BS01 rna ? GO:0000245 ... Q03338 28530653
    15 5nrl:G (7.2) BS02 rna ? GO:0000245 ... Q03338 28530653
    16 5nrl:H (7.2) BS01 rna ? GO:0000245 ... P20053 28530653
    17 5nrl:J (7.2) BS01 rna ? GO:0000244 ... P19735 28530653
    18 5nrl:K (7.2) BS01 rna ? GO:0000245 ... P39990 28530653
    19 5nrl:K (7.2) BS02 rna ? GO:0000245 ... P39990 28530653
    20 5nrl:L (7.2) BS01 rna ? GO:0000398 ... Q12368 28530653
    21 5nrl:L (7.2) BS02 ZN ? GO:0000398 ... Q12368 28530653
    22 5nrl:M (7.2) BS01 rna ? GO:0000388 ... Q00723 28530653
    23 5nrl:O (7.2) BS01 rna ? GO:0000245 ... P49955 28530653
    24 5nrl:O (7.2) BS02 rna ? GO:0000245 ... P49955 28530653
    25 5nrl:Q (7.2) BS01 rna ? GO:0000245 ... Q02554 28530653
    26 5nrl:R (7.2) BS01 rna ? GO:0000398 ... Q99181 28530653
    27 5nrl:S (7.2) BS01 rna ? GO:0000245 ... Q06835 28530653
    28 5nrl:S (7.2) BS02 rna ? GO:0000245 ... Q06835 28530653
    29 5nrl:S (7.2) BS03 ZN ? GO:0000245 ... Q06835 28530653
    30 5nrl:S (7.2) BS04 ZN ? GO:0000245 ... Q06835 28530653
    31 5nrl:S (7.2) BS05 ZN ? GO:0000245 ... Q06835 28530653
    32 5nrl:T (7.2) BS01 rna ? GO:0000395 ... P19736 28530653
    33 5nrl:T (7.2) BS02 rna ? GO:0000395 ... P19736 28530653
    34 5nrl:T (7.2) BS03 ZN ? GO:0000395 ... P19736 28530653
    35 5nrl:T (7.2) BS04 ZN ? GO:0000395 ... P19736 28530653
    36 5nrl:U (7.2) BS01 rna ? GO:0000245 ... Q07350 28530653
    37 5nrl:U (7.2) BS02 rna ? GO:0000245 ... Q07350 28530653
    38 5nrl:U (7.2) BS03 ZN ? GO:0000245 ... Q07350 28530653
    39 5nrl:W (7.2) BS01 rna ? GO:0000398 ... Q08963 28530653
    40 5nrl:Y (7.2) BS01 rna ? GO:0000398 ... P40567 28530653
    41 5nrl:a (7.2) BS01 rna ? GO:0000290 ... P38203 28530653
    42 5nrl:b (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    43 5nrl:d (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    44 5nrl:e (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    45 5nrl:f (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    46 5nrl:g (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    47 5nrl:h (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    48 5nrl:i (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    49 5nrl:j (7.2) BS01 rna ? GO:0000290 ... P40070 28530653
    50 5nrl:k (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    51 5nrl:l (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    52 5nrl:m (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    53 5nrl:n (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    54 5nrl:p (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    55 5nrl:q (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    56 5nrl:r (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    57 5nrl:s (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    58 5nrl:t (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    59 5nrl:u (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    60 5nrl:v (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    61 5nrl:w (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    62 5nrl:x (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    63 5nrl:y (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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