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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mc6:A (3.8) BS01 rna ? GO:0000054 ... P05750 27980209
    2 5mc6:A (3.8) BS02 rna ? GO:0000054 ... P05750 27980209
    3 5mc6:AA (3.8) BS01 rna ? GO:0000470 ... P17076 27980209
    4 5mc6:AA (3.8) BS02 rna ? GO:0000470 ... P17076 27980209
    5 5mc6:AB (3.8) BS01 rna ? GO:0002181 ... P0CX41 27980209
    6 5mc6:AB (3.8) BS02 rna ? GO:0002181 ... P0CX41 27980209
    7 5mc6:AC (3.8) BS01 rna ? GO:0002181 ... P05745 27980209
    8 5mc6:AD (3.8) BS01 rna ? GO:0002181 ... P05738 27980209
    9 5mc6:AE (3.8) BS01 rna ? GO:0002181 ... P04449 27980209
    10 5mc6:AF (3.8) BS01 rna ? GO:0000448 ... P49166 27980209
    11 5mc6:AF (3.8) BS02 rna ? GO:0000448 ... P49166 27980209
    12 5mc6:AG (3.8) BS01 rna ? GO:0000027 ... P0C0W9 27980209
    13 5mc6:AG (3.8) BS02 rna ? GO:0000027 ... P0C0W9 27980209
    14 5mc6:AG (3.8) BS03 rna ? GO:0000027 ... P0C0W9 27980209
    15 5mc6:AH (3.8) BS01 rna ? GO:0000027 ... P04456 27980209
    16 5mc6:AH (3.8) BS02 rna ? GO:0000027 ... P04456 27980209
    17 5mc6:AI (3.8) BS01 rna ? GO:0002181 ... P49167 27980209
    18 5mc6:AJ (3.8) BS01 rna ? GO:0002181 ... Q12690 27980209
    19 5mc6:AJ (3.8) BS02 rna ? GO:0002181 ... Q12690 27980209
    20 5mc6:AK (3.8) BS01 rna ? GO:0002181 ... P05743 27980209
    21 5mc6:AK (3.8) BS02 rna ? GO:0002181 ... P05743 27980209
    22 5mc6:AL (3.8) BS01 rna ? GO:0002181 ... P04650 27980209
    23 5mc6:AL (3.8) BS02 rna ? GO:0002181 ... P04650 27980209
    24 5mc6:AM (3.8) BS01 rna ? GO:0000027 ... P36105 27980209
    25 5mc6:AN (3.8) BS01 rna ? GO:0002181 ... P0C2H6 27980209
    26 5mc6:AO (3.8) BS01 rna ? GO:0000027 ... P0CH08 27980209
    27 5mc6:AP (3.8) BS01 rna ? GO:0002181 ... P0CX27 27980209
    28 5mc6:AP (3.8) BS02 rna ? GO:0002181 ... P0CX27 27980209
    29 5mc6:AQ (3.8) BS01 rna ? GO:0002181 ... P05748 27980209
    30 5mc6:AQ (3.8) BS02 rna ? GO:0002181 ... P05748 27980209
    31 5mc6:AR (3.8) BS01 rna ? GO:0002181 ... P02406 27980209
    32 5mc6:AT (3.8) BS01 rna ? GO:0002181 ... P0CX25 27980209
    33 5mc6:AU (3.8) BS01 rna ? GO:0000470 ... P26784 27980209
    34 5mc6:AV (3.8) BS01 rna ? GO:0002181 ... P05747 27980209
    35 5mc6:AW (3.8) BS01 rna ? GO:0002181 ... P0CX45 27980209
    36 5mc6:AW (3.8) BS02 rna ? GO:0002181 ... P0CX45 27980209
    37 5mc6:AX (3.8) BS01 rna ? GO:0000448 ... P05740 27980209
    38 5mc6:AX (3.8) BS02 rna ? GO:0000448 ... P05740 27980209
    39 5mc6:AY (3.8) BS01 rna ? GO:0002181 ... P14120 27980209
    40 5mc6:AZ (3.8) BS01 rna N/A N/A N/A 27980209
    41 5mc6:B (3.8) BS01 rna ? GO:0000028 ... P26783 27980209
    42 5mc6:B (3.8) BS02 rna ? GO:0000028 ... P26783 27980209
    43 5mc6:BA (3.8) BS01 rna ? GO:0000027 ... P14126 27980209
    44 5mc6:BB (3.8) BS01 rna ? GO:0002181 ... P0CX49 27980209
    45 5mc6:BC (3.8) BS01 rna ? GO:0002181 ... P0C2H8 27980209
    46 5mc6:BD (3.8) BS01 rna ? GO:0000027 ... P41805 27980209
    47 5mc6:BD (3.8) BS02 rna ? GO:0000027 ... P41805 27980209
    48 5mc6:BD (3.8) BS03 rna ? GO:0000027 ... P41805 27980209
    49 5mc6:BD (3.8) BS04 rna ? GO:0000027 ... P41805 27980209
    50 5mc6:BE (3.8) BS01 rna ? GO:0002181 ... P10664 27980209
    51 5mc6:BE (3.8) BS02 rna ? GO:0002181 ... P10664 27980209
    52 5mc6:BF (3.8) BS01 rna ? GO:0002181 ... P0CX82 27980209
    53 5mc6:BF (3.8) BS02 rna ? GO:0002181 ... P0CX82 27980209
    54 5mc6:BG (3.8) BS01 rna ? GO:0002181 ... P38061 27980209
    55 5mc6:BH (3.8) BS01 rna ? GO:0002181 ... P0CX23 27980209
    56 5mc6:BH (3.8) BS02 rna ? GO:0002181 ... P0CX23 27980209
    57 5mc6:BI (3.8) BS01 rna ? GO:0000027 ... P26321 27980209
    58 5mc6:BI (3.8) BS02 rna ? GO:0000027 ... P26321 27980209
    59 5mc6:BJ (3.8) BS01 rna ? GO:0002181 ... Q02753 27980209
    60 5mc6:BJ (3.8) BS02 rna ? GO:0002181 ... Q02753 27980209
    61 5mc6:BK (3.8) BS01 rna ? GO:0000027 ... P05744 27980209
    62 5mc6:BL (3.8) BS01 rna ? GO:0002181 ... P05749 27980209
    63 5mc6:BM (3.8) BS01 rna ? GO:0000027 ... Q02326 27980209
    64 5mc6:BN (3.8) BS01 rna ? GO:0002181 ... P87262 27980209
    65 5mc6:BO (3.8) BS01 rna ? GO:0000463 ... P05737 27980209
    66 5mc6:BO (3.8) BS02 rna ? GO:0000463 ... P05737 27980209
    67 5mc6:BP (3.8) BS01 rna ? GO:0000463 ... P0CX84 27980209
    68 5mc6:BP (3.8) BS02 rna ? GO:0000463 ... P0CX84 27980209
    69 5mc6:BT (3.8) BS01 rna ? GO:0002182 ... P23301 27980209
    70 5mc6:BT (3.8) BS02 rna ? GO:0002182 ... P23301 27980209
    71 5mc6:C (3.8) BS01 rna ? GO:0000054 ... Q08745 27980209
    72 5mc6:D (3.8) BS01 rna ? GO:0000028 ... P48589 27980209
    73 5mc6:E (3.8) BS01 rna ? GO:0000028 ... Q01855 27980209
    74 5mc6:F (3.8) BS01 rna ? GO:0000462 ... P0CX51 27980209
    75 5mc6:G (3.8) BS01 rna ? GO:0000028 ... P14127 27980209
    76 5mc6:H (3.8) BS01 rna ? GO:0000054 ... P0CX55 27980209
    77 5mc6:H (3.8) BS02 rna ? GO:0000054 ... P0CX55 27980209
    78 5mc6:I (3.8) BS01 rna ? GO:0000028 ... P07280 27980209
    79 5mc6:J (3.8) BS01 rna ? GO:0000462 ... P38701 27980209
    80 5mc6:K (3.8) BS01 rna ? GO:0002181 ... Q3E792 27980209
    81 5mc6:L (3.8) BS01 rna ? GO:0000028 ... P0C0X0 27980209
    82 5mc6:L (3.8) BS02 rna ? GO:0000028 ... P0C0X0 27980209
    83 5mc6:M (3.8) BS01 rna ? GO:0002181 ... P41057 27980209
    84 5mc6:N (3.8) BS01 rna ? GO:0000028 ... P05759 27980209
    85 5mc6:O (3.8) BS01 rna ? GO:0001965 ... P38011 27980209
    86 5mc6:P (3.8) BS01 rna ? GO:0000028 ... P32905 27980209
    87 5mc6:Q (3.8) BS01 rna ? GO:0000462 ... P33442 27980209
    88 5mc6:R (3.8) BS01 rna ? GO:0000054 ... P25443 27980209
    89 5mc6:S (3.8) BS01 rna ? GO:0002181 ... P0CX35 27980209
    90 5mc6:T (3.8) BS01 rna ? GO:0000462 ... P0CX37 27980209
    91 5mc6:U (3.8) BS01 rna ? GO:0002181 ... P26786 27980209
    92 5mc6:V (3.8) BS01 rna ? GO:0000462 ... P0CX39 27980209
    93 5mc6:V (3.8) BS02 rna ? GO:0000462 ... P0CX39 27980209
    94 5mc6:W (3.8) BS01 rna ? GO:0000462 ... O13516 27980209
    95 5mc6:X (3.8) BS01 rna ? GO:0000028 ... P0CX47 27980209
    96 5mc6:Y (3.8) BS01 rna ? GO:0000462 ... P05756 27980209
    97 5mc6:Y (3.8) BS02 rna ? GO:0000462 ... P05756 27980209
    98 5mc6:Z (3.8) BS01 rna ? GO:0000028 ... P06367 27980209
    99 5mc6:b (3.8) BS01 rna ? GO:0002181 ... P0C0W1 27980209
    100 5mc6:c (3.8) BS01 rna ? GO:0000462 ... P0CX29 27980209
    101 5mc6:c (3.8) BS02 rna ? GO:0000462 ... P0CX29 27980209
    102 5mc6:d (3.8) BS01 rna ? GO:0000462 ... P0CX31 27980209
    103 5mc6:e (3.8) BS01 rna ? GO:0000054 ... P39938 27980209
    104 5mc6:f (3.8) BS01 rna ? GO:0000028 ... P35997 27980209
    105 5mc6:g (3.8) BS01 rna ? GO:0002181 ... P0CX33 27980209
    106 5mc6:h (3.8) BS01 rna 3.6.4.13 GO:0000956 ... P35207 27980209
    107 5mc6:h (3.8) BS02 rna 3.6.4.13 GO:0000956 ... P35207 27980209
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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