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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 397 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lyb:C0 (3.25) BS01 rna ? N/A Q08745 27827794
    2 5lyb:C1 (3.25) BS01 rna ? GO:0000028 ... P0CX47 27827794
    3 5lyb:C1 (3.25) BS02 MG ? GO:0000028 ... P0CX47 27827794
    4 5lyb:C1 (3.25) BS03 MG ? GO:0000028 ... P0CX47 27827794
    5 5lyb:C2 (3.25) BS01 rna ? GO:0003735 ... P48589 27827794
    6 5lyb:C3 (3.25) BS01 rna ? GO:0000462 ... P05756 27827794
    7 5lyb:C3 (3.25) BS02 rna ? GO:0000462 ... P05756 27827794
    8 5lyb:C3 (3.25) BS03 OHX ? GO:0000462 ... P05756 27827794
    9 5lyb:C4 (3.25) BS01 rna ? GO:0000028 ... P06367 27827794
    10 5lyb:C5 (3.25) BS01 rna ? GO:0000028 ... Q01855 27827794
    11 5lyb:C5 (3.25) BS02 rna ? GO:0000028 ... Q01855 27827794
    12 5lyb:C5 (3.25) BS03 OHX ? GO:0000028 ... Q01855 27827794
    13 5lyb:C6 (3.25) BS01 rna ? GO:0000462 ... P0CX51 27827794
    14 5lyb:C7 (3.25) BS01 rna ? GO:0000028 ... P02407 27827794
    15 5lyb:C8 (3.25) BS01 rna ? GO:0000054 ... P0CX55 27827794
    16 5lyb:C8 (3.25) BS02 MG ? GO:0000054 ... P0CX55 27827794
    17 5lyb:C8 (3.25) BS03 OHX ? GO:0000054 ... P0CX55 27827794
    18 5lyb:C9 (3.25) BS01 rna ? GO:0000028 ... P07280 27827794
    19 5lyb:D0 (3.25) BS01 rna ? GO:0000462 ... P38701 27827794
    20 5lyb:D2 (3.25) BS01 rna ? GO:0002181 ... P0C0W1 27827794
    21 5lyb:D3 (3.25) BS01 rna ? GO:0003735 ... P0CY39 27827794
    22 5lyb:D4 (3.25) BS01 rna ? GO:0000462 ... P0CX31 27827794
    23 5lyb:D5 (3.25) BS01 rna ? N/A Q3E792 27827794
    24 5lyb:D6 (3.25) BS01 rna ? GO:0003735 ... P39939 27827794
    25 5lyb:D6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27827794
    26 5lyb:D7 (3.25) BS01 rna ? GO:0000028 ... P35997 27827794
    27 5lyb:D8 (3.25) BS01 rna ? GO:0000028 ... Q3E7X9 27827794
    28 5lyb:D9 (3.25) BS01 rna ? GO:0002181 ... P41057 27827794
    29 5lyb:D9 (3.25) BS02 MG ? GO:0002181 ... P41057 27827794
    30 5lyb:D9 (3.25) BS03 ZN ? GO:0002181 ... P41057 27827794
    31 5lyb:D9 (3.25) BS04 OHX ? GO:0002181 ... P41057 27827794
    32 5lyb:E0 (3.25) BS01 rna ? GO:0002181 ... P0CX33 27827794
    33 5lyb:E1 (3.25) BS01 rna ? GO:0003735 ... P05759 27827794
    34 5lyb:E1 (3.25) BS02 ZN ? GO:0003735 ... P05759 27827794
    35 5lyb:L2 (3.25) BS01 rna ? GO:0002181 ... P0CX45 27827794
    36 5lyb:L2 (3.25) BS02 rna ? GO:0002181 ... P0CX45 27827794
    37 5lyb:L2 (3.25) BS03 MG ? GO:0002181 ... P0CX45 27827794
    38 5lyb:L2 (3.25) BS04 MG ? GO:0002181 ... P0CX45 27827794
    39 5lyb:L2 (3.25) BS05 MG ? GO:0002181 ... P0CX45 27827794
    40 5lyb:L3 (3.25) BS01 rna ? GO:0000027 ... P14126 27827794
    41 5lyb:L3 (3.25) BS02 MG ? GO:0000027 ... P14126 27827794
    42 5lyb:L3 (3.25) BS03 OHX ? GO:0000027 ... P14126 27827794
    43 5lyb:L3 (3.25) BS04 OHX ? GO:0000027 ... P14126 27827794
    44 5lyb:L4 (3.25) BS01 rna ? GO:0002181 ... P10664 27827794
    45 5lyb:L4 (3.25) BS02 rna ? GO:0002181 ... P10664 27827794
    46 5lyb:L4 (3.25) BS03 MG ? GO:0002181 ... P10664 27827794
    47 5lyb:L4 (3.25) BS04 MG ? GO:0002181 ... P10664 27827794
    48 5lyb:L4 (3.25) BS05 MG ? GO:0002181 ... P10664 27827794
    49 5lyb:L4 (3.25) BS06 MG ? GO:0002181 ... P10664 27827794
    50 5lyb:L4 (3.25) BS07 MG ? GO:0002181 ... P10664 27827794
    51 5lyb:L4 (3.25) BS08 OHX ? GO:0002181 ... P10664 27827794
    52 5lyb:L5 (3.25) BS01 rna ? GO:0000027 ... P26321 27827794
    53 5lyb:L5 (3.25) BS02 rna ? GO:0000027 ... P26321 27827794
    54 5lyb:L5 (3.25) BS03 OHX ? GO:0000027 ... P26321 27827794
    55 5lyb:L6 (3.25) BS01 rna ? GO:0000027 ... Q02326 27827794
    56 5lyb:L7 (3.25) BS01 rna ? GO:0000463 ... P05737 27827794
    57 5lyb:L7 (3.25) BS02 rna ? GO:0000463 ... P05737 27827794
    58 5lyb:L8 (3.25) BS01 rna ? GO:0000470 ... P17076 27827794
    59 5lyb:L8 (3.25) BS02 rna ? GO:0000470 ... P17076 27827794
    60 5lyb:L9 (3.25) BS01 rna ? GO:0002181 ... P05738 27827794
    61 5lyb:M0 (3.25) BS01 rna ? GO:0000027 ... P41805 27827794
    62 5lyb:M0 (3.25) BS02 rna ? GO:0000027 ... P41805 27827794
    63 5lyb:M0 (3.25) BS03 MG ? GO:0000027 ... P41805 27827794
    64 5lyb:M0 (3.25) BS04 MG ? GO:0000027 ... P41805 27827794
    65 5lyb:M0 (3.25) BS05 MG ? GO:0000027 ... P41805 27827794
    66 5lyb:M0 (3.25) BS06 MG ? GO:0000027 ... P41805 27827794
    67 5lyb:M0 (3.25) BS07 OHX ? GO:0000027 ... P41805 27827794
    68 5lyb:M0 (3.25) BS08 OHX ? GO:0000027 ... P41805 27827794
    69 5lyb:M0 (3.25) BS09 OHX ? GO:0000027 ... P41805 27827794
    70 5lyb:M1 (3.25) BS01 rna ? GO:0000027 ... Q3E757 27827794
    71 5lyb:M1 (3.25) BS02 rna ? GO:0000027 ... Q3E757 27827794
    72 5lyb:M3 (3.25) BS01 rna ? GO:0002181 ... Q12690 27827794
    73 5lyb:M3 (3.25) BS02 rna ? GO:0002181 ... Q12690 27827794
    74 5lyb:M3 (3.25) BS03 MG ? GO:0002181 ... Q12690 27827794
    75 5lyb:M3 (3.25) BS04 MG ? GO:0002181 ... Q12690 27827794
    76 5lyb:M4 (3.25) BS01 rna ? GO:0000027 ... P36105 27827794
    77 5lyb:M5 (3.25) BS01 rna ? GO:0002181 ... P05748 27827794
    78 5lyb:M5 (3.25) BS02 rna ? GO:0002181 ... P05748 27827794
    79 5lyb:M5 (3.25) BS03 MG ? GO:0002181 ... P05748 27827794
    80 5lyb:M5 (3.25) BS04 MG ? GO:0002181 ... P05748 27827794
    81 5lyb:M5 (3.25) BS05 MG ? GO:0002181 ... P05748 27827794
    82 5lyb:M5 (3.25) BS06 MG ? GO:0002181 ... P05748 27827794
    83 5lyb:M5 (3.25) BS07 MG ? GO:0002181 ... P05748 27827794
    84 5lyb:M5 (3.25) BS08 OHX ? GO:0002181 ... P05748 27827794
    85 5lyb:M6 (3.25) BS01 rna ? GO:0000470 ... P26784 27827794
    86 5lyb:M6 (3.25) BS02 MG ? GO:0000470 ... P26784 27827794
    87 5lyb:M6 (3.25) BS03 MG ? GO:0000470 ... P26784 27827794
    88 5lyb:M6 (3.25) BS04 MG ? GO:0000470 ... P26784 27827794
    89 5lyb:M6 (3.25) BS05 MG ? GO:0000470 ... P26784 27827794
    90 5lyb:M6 (3.25) BS06 MG ? GO:0000470 ... P26784 27827794
    91 5lyb:M7 (3.25) BS01 rna ? GO:0000448 ... P05740 27827794
    92 5lyb:M7 (3.25) BS02 rna ? GO:0000448 ... P05740 27827794
    93 5lyb:M7 (3.25) BS03 MG ? GO:0000448 ... P05740 27827794
    94 5lyb:M7 (3.25) BS04 MG ? GO:0000448 ... P05740 27827794
    95 5lyb:M7 (3.25) BS05 MG ? GO:0000448 ... P05740 27827794
    96 5lyb:M7 (3.25) BS06 OHX ? GO:0000448 ... P05740 27827794
    97 5lyb:M8 (3.25) BS01 rna ? GO:0002181 ... P0CX49 27827794
    98 5lyb:M8 (3.25) BS02 MG ? GO:0002181 ... P0CX49 27827794
    99 5lyb:M8 (3.25) BS03 MG ? GO:0002181 ... P0CX49 27827794
    100 5lyb:M8 (3.25) BS04 MG ? GO:0002181 ... P0CX49 27827794
    101 5lyb:M9 (3.25) BS01 rna ? GO:0002181 ... P0CX82 27827794
    102 5lyb:M9 (3.25) BS02 rna ? GO:0002181 ... P0CX82 27827794
    103 5lyb:M9 (3.25) BS03 MG ? GO:0002181 ... P0CX82 27827794
    104 5lyb:M9 (3.25) BS04 MG ? GO:0002181 ... P0CX82 27827794
    105 5lyb:M9 (3.25) BS05 OHX ? GO:0002181 ... P0CX82 27827794
    106 5lyb:N0 (3.25) BS01 rna ? GO:0002181 ... P0CX23 27827794
    107 5lyb:N0 (3.25) BS02 rna ? GO:0002181 ... P0CX23 27827794
    108 5lyb:N0 (3.25) BS03 MG ? GO:0002181 ... P0CX23 27827794
    109 5lyb:N0 (3.25) BS04 MG ? GO:0002181 ... P0CX23 27827794
    110 5lyb:N1 (3.25) BS01 rna ? GO:0002181 ... Q02753 27827794
    111 5lyb:N1 (3.25) BS02 rna ? GO:0002181 ... Q02753 27827794
    112 5lyb:N1 (3.25) BS03 MG ? GO:0002181 ... Q02753 27827794
    113 5lyb:N1 (3.25) BS04 OHX ? GO:0002181 ... Q02753 27827794
    114 5lyb:N2 (3.25) BS01 rna ? GO:0003735 ... P05749 27827794
    115 5lyb:N3 (3.25) BS01 rna ? GO:0002181 ... P0CX41 27827794
    116 5lyb:N3 (3.25) BS02 rna ? GO:0002181 ... P0CX41 27827794
    117 5lyb:N3 (3.25) BS03 MG ? GO:0002181 ... P0CX41 27827794
    118 5lyb:N4 (3.25) BS01 rna ? N/A P04449 27827794
    119 5lyb:N4 (3.25) BS02 rna ? N/A P04449 27827794
    120 5lyb:N5 (3.25) BS01 rna ? GO:0003735 ... P04456 27827794
    121 5lyb:N5 (3.25) BS02 rna ? GO:0003735 ... P04456 27827794
    122 5lyb:N5 (3.25) BS03 MG ? GO:0003735 ... P04456 27827794
    123 5lyb:N6 (3.25) BS01 rna ? GO:0002181 ... P05743 27827794
    124 5lyb:N6 (3.25) BS02 rna ? GO:0002181 ... P05743 27827794
    125 5lyb:N6 (3.25) BS03 MG ? GO:0002181 ... P05743 27827794
    126 5lyb:N7 (3.25) BS01 rna ? GO:0002181 ... P0C2H6 27827794
    127 5lyb:N8 (3.25) BS01 rna ? GO:0002181 ... P02406 27827794
    128 5lyb:N8 (3.25) BS02 MG ? GO:0002181 ... P02406 27827794
    129 5lyb:N8 (3.25) BS03 MG ? GO:0002181 ... P02406 27827794
    130 5lyb:N8 (3.25) BS04 MG ? GO:0002181 ... P02406 27827794
    131 5lyb:N8 (3.25) BS05 MG ? GO:0002181 ... P02406 27827794
    132 5lyb:N9 (3.25) BS01 rna ? GO:0002181 ... P05747 27827794
    133 5lyb:N9 (3.25) BS02 OHX ? GO:0002181 ... P05747 27827794
    134 5lyb:O0 (3.25) BS01 rna ? GO:0002181 ... P14120 27827794
    135 5lyb:O1 (3.25) BS01 rna ? GO:0002181 ... P0C2H8 27827794
    136 5lyb:O1 (3.25) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    137 5lyb:O1 (3.25) BS03 MG ? GO:0002181 ... P0C2H8 27827794
    138 5lyb:O1 (3.25) BS04 MG ? GO:0002181 ... P0C2H8 27827794
    139 5lyb:O2 (3.25) BS01 rna ? GO:0002181 ... P38061 27827794
    140 5lyb:O2 (3.25) BS02 MG ? GO:0002181 ... P38061 27827794
    141 5lyb:O2 (3.25) BS03 MG ? GO:0002181 ... P38061 27827794
    142 5lyb:O3 (3.25) BS01 rna ? GO:0000027 ... P05744 27827794
    143 5lyb:O3 (3.25) BS02 MG ? GO:0000027 ... P05744 27827794
    144 5lyb:O3 (3.25) BS03 MG ? GO:0000027 ... P05744 27827794
    145 5lyb:O3 (3.25) BS04 OHX ? GO:0000027 ... P05744 27827794
    146 5lyb:O4 (3.25) BS01 rna ? GO:0002181 ... P87262 27827794
    147 5lyb:O4 (3.25) BS02 MG ? GO:0002181 ... P87262 27827794
    148 5lyb:O5 (3.25) BS01 rna ? GO:0000463 ... P0CX84 27827794
    149 5lyb:O5 (3.25) BS02 rna ? GO:0000463 ... P0CX84 27827794
    150 5lyb:O5 (3.25) BS03 MG ? GO:0000463 ... P0CX84 27827794
    151 5lyb:O6 (3.25) BS01 rna ? GO:0002181 ... P05745 27827794
    152 5lyb:O7 (3.25) BS01 rna ? GO:0000448 ... P49166 27827794
    153 5lyb:O7 (3.25) BS02 rna ? GO:0000448 ... P49166 27827794
    154 5lyb:O7 (3.25) BS03 MG ? GO:0000448 ... P49166 27827794
    155 5lyb:O7 (3.25) BS04 ZN ? GO:0000448 ... P49166 27827794
    156 5lyb:O7 (3.25) BS05 MG ? GO:0000448 ... P49166 27827794
    157 5lyb:O7 (3.25) BS06 MG ? GO:0000448 ... P49166 27827794
    158 5lyb:O7 (3.25) BS07 OHX ? GO:0000448 ... P49166 27827794
    159 5lyb:O7 (3.25) BS08 OHX ? GO:0000448 ... P49166 27827794
    160 5lyb:O8 (3.25) BS01 rna ? GO:0002181 ... P49167 27827794
    161 5lyb:O9 (3.25) BS01 rna ? GO:0002181 ... P04650 27827794
    162 5lyb:O9 (3.25) BS02 rna ? GO:0002181 ... P04650 27827794
    163 5lyb:O9 (3.25) BS03 OHX ? GO:0002181 ... P04650 27827794
    164 5lyb:O9 (3.25) BS04 MG ? GO:0002181 ... P04650 27827794
    165 5lyb:Q0 (3.25) BS01 rna ? GO:0003735 ... P0CH08 27827794
    166 5lyb:Q0 (3.25) BS02 MG ? GO:0003735 ... P0CH08 27827794
    167 5lyb:Q0 (3.25) BS03 MG ? GO:0003735 ... P0CH08 27827794
    168 5lyb:Q0 (3.25) BS04 ZN ? GO:0003735 ... P0CH08 27827794
    169 5lyb:Q2 (3.25) BS01 rna ? GO:0002181 ... P0CX27 27827794
    170 5lyb:Q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    171 5lyb:Q2 (3.25) BS03 OHX ? GO:0002181 ... P0CX27 27827794
    172 5lyb:Q3 (3.25) BS01 rna ? GO:0002181 ... P0CX25 27827794
    173 5lyb:Q3 (3.25) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    174 5lyb:S0 (3.25) BS01 rna ? GO:0003735 ... B3LI22 27827794
    175 5lyb:S1 (3.25) BS01 rna ? GO:0003735 ... B3RHV0 27827794
    176 5lyb:S2 (3.25) BS01 rna ? GO:0003723 ... P25443 27827794
    177 5lyb:S3 (3.25) BS01 rna ? GO:0000054 ... P05750 27827794
    178 5lyb:S4 (3.25) BS01 rna ? GO:0002181 ... P0CX35 27827794
    179 5lyb:S5 (3.25) BS01 rna ? GO:0000028 ... P26783 27827794
    180 5lyb:S6 (3.25) BS01 rna ? GO:0000462 ... P0CX37 27827794
    181 5lyb:S7 (3.25) BS01 rna ? GO:0002181 ... P26786 27827794
    182 5lyb:S8 (3.25) BS01 rna ? GO:0000462 ... P0CX39 27827794
    183 5lyb:S8 (3.25) BS02 rna ? GO:0000462 ... P0CX39 27827794
    184 5lyb:S8 (3.25) BS03 MG ? GO:0000462 ... P0CX39 27827794
    185 5lyb:S8 (3.25) BS04 OHX ? GO:0000462 ... P0CX39 27827794
    186 5lyb:S9 (3.25) BS01 rna ? GO:0000462 ... O13516 27827794
    187 5lyb:S9 (3.25) BS02 OHX ? GO:0000462 ... O13516 27827794
    188 5lyb:SM (3.25) BS01 rna ? N/A P39015 27827794
    189 5lyb:SM (3.25) BS02 rna ? N/A P39015 27827794
    190 5lyb:SR (3.25) BS01 rna ? GO:0001965 ... P38011 27827794
    191 5lyb:SR (3.25) BS02 OHX ? GO:0001965 ... P38011 27827794
    192 5lyb:c0 (3.25) BS01 rna ? N/A Q08745 27827794
    193 5lyb:c1 (3.25) BS01 rna ? GO:0000028 ... P0CX47 27827794
    194 5lyb:c2 (3.25) BS01 rna N/A GO:0003735 ... N/A 27827794
    195 5lyb:c3 (3.25) BS01 rna ? GO:0000462 ... P05756 27827794
    196 5lyb:c3 (3.25) BS02 rna ? GO:0000462 ... P05756 27827794
    197 5lyb:c3 (3.25) BS03 OHX ? GO:0000462 ... P05756 27827794
    198 5lyb:c4 (3.25) BS01 rna ? GO:0000028 ... P06367 27827794
    199 5lyb:c5 (3.25) BS01 rna ? GO:0000028 ... Q01855 27827794
    200 5lyb:c5 (3.25) BS02 OHX ? GO:0000028 ... Q01855 27827794
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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