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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lks:LA (3.6) BS01 rna ? GO:0002181 ... P62917 27665925
    2 5lks:LB (3.6) BS01 rna ? GO:0002181 ... P39023 27665925
    3 5lks:LC (3.6) BS01 rna ? GO:0002181 ... P36578 27665925
    4 5lks:LC (3.6) BS02 rna ? GO:0002181 ... P36578 27665925
    5 5lks:LD (3.6) BS01 rna ? GO:0000027 ... P46777 27665925
    6 5lks:LD (3.6) BS02 rna ? GO:0000027 ... P46777 27665925
    7 5lks:LE (3.6) BS01 rna ? GO:0000027 ... Q02878 27665925
    8 5lks:LF (3.6) BS01 rna ? GO:0000463 ... P18124 27665925
    9 5lks:LF (3.6) BS02 rna ? GO:0000463 ... P18124 27665925
    10 5lks:LG (3.6) BS01 rna ? GO:0000470 ... P62424 27665925
    11 5lks:LG (3.6) BS02 rna ? GO:0000470 ... P62424 27665925
    12 5lks:LH (3.6) BS01 rna ? GO:0002181 ... P32969 27665925
    13 5lks:LI (3.6) BS01 rna ? GO:0000027 ... Q96L21 27665925
    14 5lks:LI (3.6) BS02 rna ? GO:0000027 ... Q96L21 27665925
    15 5lks:LJ (3.6) BS01 rna ? GO:0000027 ... P62913 27665925
    16 5lks:LJ (3.6) BS02 rna ? GO:0000027 ... P62913 27665925
    17 5lks:LL (3.6) BS01 rna ? GO:0001824 ... P26373 27665925
    18 5lks:LL (3.6) BS02 rna ? GO:0001824 ... P26373 27665925
    19 5lks:LM (3.6) BS01 rna ? GO:0002181 ... P50914 27665925
    20 5lks:LN (3.6) BS01 rna ? GO:0002181 ... P61313 27665925
    21 5lks:LN (3.6) BS02 rna ? GO:0002181 ... P61313 27665925
    22 5lks:LO (3.6) BS01 rna ? GO:0002181 ... P40429 27665925
    23 5lks:LP (3.6) BS01 rna ? GO:0002181 ... P18621 27665925
    24 5lks:LP (3.6) BS02 rna ? GO:0002181 ... P18621 27665925
    25 5lks:LP (3.6) BS03 MG ? GO:0002181 ... P18621 27665925
    26 5lks:LQ (3.6) BS01 rna ? GO:0002181 ... Q07020 27665925
    27 5lks:LR (3.6) BS01 rna ? GO:0002181 ... P84098 27665925
    28 5lks:LR (3.6) BS02 rna ? GO:0002181 ... P84098 27665925
    29 5lks:LS (3.6) BS01 rna ? GO:0002181 ... Q02543 27665925
    30 5lks:LS (3.6) BS02 rna ? GO:0002181 ... Q02543 27665925
    31 5lks:LT (3.6) BS01 rna ? GO:0002181 ... P46778 27665925
    32 5lks:LT (3.6) BS02 rna ? GO:0002181 ... P46778 27665925
    33 5lks:LU (3.6) BS01 rna ? GO:0002181 ... P35268 27665925
    34 5lks:LV (3.6) BS01 rna ? GO:0000122 ... P62829 27665925
    35 5lks:LW (3.6) BS01 rna ? GO:0000027 ... P83731 27665925
    36 5lks:LW (3.6) BS02 rna ? GO:0000027 ... P83731 27665925
    37 5lks:LX (3.6) BS01 rna ? GO:0000027 ... P62750 27665925
    38 5lks:LX (3.6) BS02 rna ? GO:0000027 ... P62750 27665925
    39 5lks:LY (3.6) BS01 rna ? GO:0002181 ... P61254 27665925
    40 5lks:LY (3.6) BS02 rna ? GO:0002181 ... P61254 27665925
    41 5lks:LZ (3.6) BS01 rna ? GO:0002181 ... P61353 27665925
    42 5lks:La (3.6) BS01 rna ? GO:0002181 ... P46776 27665925
    43 5lks:Lb (3.6) BS01 rna N/A GO:0003735 ... N/A 27665925
    44 5lks:Lc (3.6) BS01 rna ? GO:0002181 ... P62888 27665925
    45 5lks:Ld (3.6) BS01 rna ? GO:0002181 ... P62899 27665925
    46 5lks:Le (3.6) BS01 rna ? GO:0002181 ... P62910 27665925
    47 5lks:Lf (3.6) BS01 rna ? GO:0000049 ... P18077 27665925
    48 5lks:Lg (3.6) BS01 rna ? GO:0002181 ... P49207 27665925
    49 5lks:Lg (3.6) BS02 ZN ? GO:0002181 ... P49207 27665925
    50 5lks:Lh (3.6) BS01 rna ? GO:0000463 ... P42766 27665925
    51 5lks:Lh (3.6) BS02 rna ? GO:0000463 ... P42766 27665925
    52 5lks:Li (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 27665925
    53 5lks:Lj (3.6) BS01 rna ? GO:0002181 ... P61927 27665925
    54 5lks:Lj (3.6) BS02 rna ? GO:0002181 ... P61927 27665925
    55 5lks:Lj (3.6) BS03 ZN ? GO:0002181 ... P61927 27665925
    56 5lks:Lk (3.6) BS01 rna ? GO:0001501 ... P63173 27665925
    57 5lks:Ll (3.6) BS01 rna ? GO:0002181 ... P62891 27665925
    58 5lks:Ll (3.6) BS02 rna ? GO:0002181 ... P62891 27665925
    59 5lks:Lm (3.6) BS01 rna ? GO:0002181 ... P62987 27665925
    60 5lks:Lm (3.6) BS02 ZN ? GO:0002181 ... P62987 27665925
    61 5lks:Lo (3.6) BS01 rna ? GO:0002181 ... P83881 27665925
    62 5lks:Lo (3.6) BS02 ZN ? GO:0002181 ... P83881 27665925
    63 5lks:Lp (3.6) BS01 rna ? GO:0002181 ... P61513 27665925
    64 5lks:Lp (3.6) BS02 ZN ? GO:0002181 ... P61513 27665925
    65 5lks:Lr (3.6) BS01 rna ? GO:0002181 ... P46779 27665925
    66 5lks:Lz (3.6) BS01 rna ? GO:0002181 ... P62906 27665925
    67 5lks:SA (3.6) BS01 rna ? GO:0000028 ... P08865 27665925
    68 5lks:SB (3.6) BS01 rna ? GO:0002181 ... P61247 27665925
    69 5lks:SC (3.6) BS01 rna ? GO:0002181 ... P15880 27665925
    70 5lks:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 27665925
    71 5lks:SE (3.6) BS01 rna ? GO:0002181 ... P62701 27665925
    72 5lks:SF (3.6) BS01 rna ? GO:0000028 ... P46782 27665925
    73 5lks:SG (3.6) BS01 rna ? GO:0000082 ... P62753 27665925
    74 5lks:SH (3.6) BS01 rna ? GO:0001843 ... P62081 27665925
    75 5lks:SI (3.6) BS01 rna ? GO:0000462 ... P62241 27665925
    76 5lks:SI (3.6) BS02 rna ? GO:0000462 ... P62241 27665925
    77 5lks:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 27665925
    78 5lks:SK (3.6) BS01 rna ? GO:0002181 ... P46783 27665925
    79 5lks:SL (3.6) BS01 rna ? GO:0002181 ... P62280 27665925
    80 5lks:SM (3.6) BS01 rna ? GO:0002181 ... P25398 27665925
    81 5lks:SN (3.6) BS01 rna ? GO:0002181 ... P62277 27665925
    82 5lks:SN (3.6) BS02 rna ? GO:0002181 ... P62277 27665925
    83 5lks:SO (3.6) BS01 rna ? GO:0000028 ... P62263 27665925
    84 5lks:SP (3.6) BS01 rna ? GO:0000028 ... P62841 27665925
    85 5lks:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 27665925
    86 5lks:SR (3.6) BS01 rna ? GO:0002181 ... P08708 27665925
    87 5lks:SS (3.6) BS01 rna ? GO:0002181 ... P62269 27665925
    88 5lks:ST (3.6) BS01 rna ? GO:0000028 ... P39019 27665925
    89 5lks:SU (3.6) BS01 rna ? GO:0002181 ... P60866 27665925
    90 5lks:SW (3.6) BS01 rna ? GO:0002181 ... P62244 27665925
    91 5lks:SX (3.6) BS01 rna ? GO:0002181 ... P62266 27665925
    92 5lks:SY (3.6) BS01 rna ? GO:0002181 ... P62847 27665925
    93 5lks:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 27665925
    94 5lks:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 27665925
    95 5lks:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 27665925
    96 5lks:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 27665925
    97 5lks:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 27665925
    98 5lks:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 27665925
    99 5lks:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 27665925
    100 5lks:Se (3.6) BS01 rna N/A GO:0003735 ... N/A 27665925
    101 5lks:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 27665925
    102 5lks:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 27665925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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