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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5kcr:10 (3.6) BS01 rna ? GO:0000027 ... P0A7L8 27330110
    2 5kcr:10 (3.6) BS02 rna ? GO:0000027 ... P0A7L8 27330110
    3 5kcr:11 (3.6) BS01 rna ? GO:0000027 ... P0A7M2 27330110
    4 5kcr:12 (3.6) BS01 rna ? GO:0000027 ... P0A7M6 27330110
    5 5kcr:13 (3.6) BS01 rna ? GO:0000027 ... P0AG51 27330110
    6 5kcr:15 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 27330110
    7 5kcr:16 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 27330110
    8 5kcr:17 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 27330110
    9 5kcr:18 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 27330110
    10 5kcr:19 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 27330110
    11 5kcr:19 (3.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27330110
    12 5kcr:1D (3.6) BS01 rna ? GO:0000027 ... P60422 27330110
    13 5kcr:1D (3.6) BS02 rna ? GO:0000027 ... P60422 27330110
    14 5kcr:1E (3.6) BS01 rna ? GO:0000027 ... P60438 27330110
    15 5kcr:1F (3.6) BS01 rna ? GO:0001070 ... P60723 27330110
    16 5kcr:1G (3.6) BS01 rna ? GO:0000027 ... P62399 27330110
    17 5kcr:1G (3.6) BS02 rna ? GO:0000027 ... P62399 27330110
    18 5kcr:1G (3.6) BS03 rna ? GO:0000027 ... P62399 27330110
    19 5kcr:1H (3.6) BS01 rna ? GO:0000027 ... P0AG55 27330110
    20 5kcr:1I (3.6) BS01 rna ? GO:0002181 ... P0A7R1 27330110
    21 5kcr:1J (3.6) BS01 rna ? GO:0002181 ... P0A7J3 27330110
    22 5kcr:1K (3.6) BS01 rna ? GO:0000027 ... P0A7J7 27330110
    23 5kcr:1N (3.6) BS01 rna ? GO:0002181 ... P0AA10 27330110
    24 5kcr:1O (3.6) BS01 rna ? GO:0002181 ... P0ADY3 27330110
    25 5kcr:1P (3.6) BS01 rna ? GO:0002181 ... P02413 27330110
    26 5kcr:1Q (3.6) BS01 rna ? GO:0000027 ... P0ADY7 27330110
    27 5kcr:1Q (3.6) BS02 rna ? GO:0000027 ... P0ADY7 27330110
    28 5kcr:1R (3.6) BS01 rna ? GO:0000027 ... P0AG44 27330110
    29 5kcr:1S (3.6) BS01 rna ? GO:0002181 ... P0C018 27330110
    30 5kcr:1S (3.6) BS02 rna ? GO:0002181 ... P0C018 27330110
    31 5kcr:1T (3.6) BS01 rna ? GO:0000027 ... P0A7K6 27330110
    32 5kcr:1U (3.6) BS01 rna ? GO:0000027 ... P0A7L3 27330110
    33 5kcr:1V (3.6) BS01 rna ? GO:0002181 ... P0AG48 27330110
    34 5kcr:1W (3.6) BS01 rna ? GO:0002181 ... P61175 27330110
    35 5kcr:1X (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 27330110
    36 5kcr:1Y (3.6) BS01 rna ? GO:0000027 ... P60624 27330110
    37 5kcr:1Z (3.6) BS01 rna ? GO:0000027 ... P68919 27330110
    38 5kcr:1Z (3.6) BS02 rna ? GO:0000027 ... P68919 27330110
    39 5kcr:1b (3.6) BS01 rna ? GO:0000028 ... P0A7V0 27330110
    40 5kcr:1c (3.6) BS01 rna ? GO:0000028 ... P0A7V3 27330110
    41 5kcr:1d (3.6) BS01 rna ? GO:0000028 ... P0A7V8 27330110
    42 5kcr:1e (3.6) BS01 rna ? GO:0000028 ... P0A7W1 27330110
    43 5kcr:1f (3.6) BS01 rna ? GO:0002181 ... P02358 27330110
    44 5kcr:1g (3.6) BS01 rna ? GO:0000028 ... P02359 27330110
    45 5kcr:1h (3.6) BS01 rna ? GO:0000028 ... P0A7W7 27330110
    46 5kcr:1i (3.6) BS01 rna ? GO:0000049 ... P0A7X3 27330110
    47 5kcr:1i (3.6) BS02 rna ? GO:0000049 ... P0A7X3 27330110
    48 5kcr:1j (3.6) BS01 rna ? GO:0000049 ... P0A7R5 27330110
    49 5kcr:1k (3.6) BS01 rna ? GO:0002181 ... P0A7R9 27330110
    50 5kcr:1l (3.6) BS01 rna ? GO:0000049 ... P0A7S3 27330110
    51 5kcr:1m (3.6) BS01 rna ? GO:0000049 ... P0A7S9 27330110
    52 5kcr:1m (3.6) BS02 rna ? GO:0000049 ... P0A7S9 27330110
    53 5kcr:1n (3.6) BS01 rna ? GO:0000028 ... P0AG59 27330110
    54 5kcr:1o (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 27330110
    55 5kcr:1o (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 27330110
    56 5kcr:1p (3.6) BS01 rna ? GO:0000028 ... P0A7T3 27330110
    57 5kcr:1q (3.6) BS01 rna ? GO:0000028 ... P0AG63 27330110
    58 5kcr:1r (3.6) BS01 rna ? GO:0002181 ... P0A7T7 27330110
    59 5kcr:1s (3.6) BS01 rna ? GO:0000028 ... P0A7U3 27330110
    60 5kcr:1t (3.6) BS01 rna ? GO:0000028 ... P0A7U7 27330110
    61 5kcr:1u (3.6) BS01 rna ? GO:0000028 ... P68679 27330110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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