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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5juu:AA (4.0) BS01 rna ? GO:0002181 ... P0CX41 27159452
    2 5juu:AB (4.0) BS01 rna ? GO:0000054 ... P05750 27159452
    3 5juu:AB (4.0) BS02 rna ? GO:0000054 ... P05750 27159452
    4 5juu:AC (4.0) BS01 rna ? GO:0002181 ... P41057 27159452
    5 5juu:BA (4.0) BS01 rna ? GO:0002181 ... P04449 27159452
    6 5juu:BB (4.0) BS01 rna ? GO:0002181 ... P0CX35 27159452
    7 5juu:BC (4.0) BS01 rna ? GO:0002181 ... P0CX33 27159452
    8 5juu:CA (4.0) BS01 rna ? GO:0000027 ... P04456 27159452
    9 5juu:CA (4.0) BS02 rna ? GO:0000027 ... P04456 27159452
    10 5juu:CB (4.0) BS01 rna ? GO:0000028 ... P26783 27159452
    11 5juu:CB (4.0) BS02 rna ? GO:0000028 ... P26783 27159452
    12 5juu:CC (4.0) BS01 rna ? GO:0000028 ... P05759 27159452
    13 5juu:DA (4.0) BS01 rna ? GO:0002181 ... P05743 27159452
    14 5juu:DA (4.0) BS02 rna ? GO:0002181 ... P05743 27159452
    15 5juu:DB (4.0) BS01 rna ? GO:0000462 ... P0CX37 27159452
    16 5juu:DC (4.0) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    17 5juu:DC (4.0) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    18 5juu:DC (4.0) BS03 rna 3.6.5.- GO:0003746 ... P32324 27159452
    19 5juu:DC (4.0) BS04 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    20 5juu:DC (4.0) BS05 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    21 5juu:E (4.0) BS01 rna ? GO:0000055 ... P0CX43 27159452
    22 5juu:E (4.0) BS02 rna ? GO:0000055 ... P0CX43 27159452
    23 5juu:EA (4.0) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    24 5juu:EB (4.0) BS01 rna ? GO:0002181 ... P26786 27159452
    25 5juu:F (4.0) BS01 rna ? GO:0002181 ... P0CX45 27159452
    26 5juu:F (4.0) BS02 rna ? GO:0002181 ... P0CX45 27159452
    27 5juu:FA (4.0) BS01 rna ? GO:0002181 ... P02406 27159452
    28 5juu:FB (4.0) BS01 rna ? GO:0000462 ... P0CX39 27159452
    29 5juu:FB (4.0) BS02 rna ? GO:0000462 ... P0CX39 27159452
    30 5juu:G (4.0) BS01 rna ? GO:0000027 ... P14126 27159452
    31 5juu:GA (4.0) BS01 rna ? GO:0002181 ... P05747 27159452
    32 5juu:GB (4.0) BS01 rna ? GO:0000462 ... O13516 27159452
    33 5juu:H (4.0) BS01 rna ? GO:0002181 ... P10664 27159452
    34 5juu:H (4.0) BS02 rna ? GO:0002181 ... P10664 27159452
    35 5juu:HA (4.0) BS01 rna ? GO:0002181 ... P14120 27159452
    36 5juu:HB (4.0) BS01 rna ? GO:0000054 ... Q08745 27159452
    37 5juu:I (4.0) BS01 rna ? GO:0000027 ... P26321 27159452
    38 5juu:I (4.0) BS02 rna ? GO:0000027 ... P26321 27159452
    39 5juu:IA (4.0) BS01 rna ? GO:0002181 ... P0C2H8 27159452
    40 5juu:IB (4.0) BS01 rna ? GO:0000028 ... P0CX47 27159452
    41 5juu:J (4.0) BS01 rna ? GO:0000027 ... Q02326 27159452
    42 5juu:JA (4.0) BS01 rna ? GO:0002181 ... P38061 27159452
    43 5juu:JB (4.0) BS01 rna ? GO:0000028 ... P48589 27159452
    44 5juu:K (4.0) BS01 rna ? GO:0000463 ... P05737 27159452
    45 5juu:K (4.0) BS02 rna ? GO:0000463 ... P05737 27159452
    46 5juu:KA (4.0) BS01 rna ? GO:0000027 ... P05744 27159452
    47 5juu:KB (4.0) BS01 rna ? GO:0000462 ... P05756 27159452
    48 5juu:L (4.0) BS01 rna ? GO:0000470 ... P17076 27159452
    49 5juu:L (4.0) BS02 rna ? GO:0000470 ... P17076 27159452
    50 5juu:LA (4.0) BS01 rna ? GO:0002181 ... P87262 27159452
    51 5juu:LB (4.0) BS01 rna ? GO:0000028 ... P06367 27159452
    52 5juu:M (4.0) BS01 rna ? GO:0002181 ... P05738 27159452
    53 5juu:MA (4.0) BS01 rna ? GO:0000463 ... P0CX84 27159452
    54 5juu:MA (4.0) BS02 rna ? GO:0000463 ... P0CX84 27159452
    55 5juu:MB (4.0) BS01 rna ? GO:0000028 ... Q01855 27159452
    56 5juu:N (4.0) BS01 rna ? GO:0000027 ... P41805 27159452
    57 5juu:N (4.0) BS02 rna ? GO:0000027 ... P41805 27159452
    58 5juu:NA (4.0) BS01 rna ? GO:0002181 ... P05745 27159452
    59 5juu:NB (4.0) BS01 rna ? GO:0000462 ... P0CX51 27159452
    60 5juu:O (4.0) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    61 5juu:O (4.0) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    62 5juu:OA (4.0) BS01 rna ? GO:0000448 ... P49166 27159452
    63 5juu:OA (4.0) BS02 rna ? GO:0000448 ... P49166 27159452
    64 5juu:OB (4.0) BS01 rna ? GO:0000028 ... P02407 27159452
    65 5juu:P (4.0) BS01 rna ? GO:0000027 ... P0CX53 27159452
    66 5juu:PA (4.0) BS01 rna ? GO:0002181 ... P49167 27159452
    67 5juu:PB (4.0) BS01 rna ? GO:0000054 ... P0CX55 27159452
    68 5juu:Q (4.0) BS01 rna ? GO:0002181 ... Q12690 27159452
    69 5juu:Q (4.0) BS02 rna ? GO:0002181 ... Q12690 27159452
    70 5juu:QA (4.0) BS01 rna ? GO:0002181 ... P04650 27159452
    71 5juu:QA (4.0) BS02 rna ? GO:0002181 ... P04650 27159452
    72 5juu:QB (4.0) BS01 rna ? GO:0000028 ... P07280 27159452
    73 5juu:R (4.0) BS01 rna ? GO:0000027 ... P36105 27159452
    74 5juu:RA (4.0) BS01 rna ? GO:0000027 ... P0CH08 27159452
    75 5juu:RB (4.0) BS01 rna ? GO:0000462 ... P38701 27159452
    76 5juu:S (4.0) BS01 rna ? GO:0002181 ... P05748 27159452
    77 5juu:S (4.0) BS02 rna ? GO:0002181 ... P05748 27159452
    78 5juu:SB (4.0) BS01 rna ? GO:0000447 ... P0C0V8 27159452
    79 5juu:T (4.0) BS01 rna ? GO:0000470 ... P26784 27159452
    80 5juu:TA (4.0) BS01 rna ? GO:0002181 ... P0CX27 27159452
    81 5juu:TB (4.0) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    82 5juu:U (4.0) BS01 rna ? GO:0000448 ... P05740 27159452
    83 5juu:U (4.0) BS02 rna ? GO:0000448 ... P05740 27159452
    84 5juu:UA (4.0) BS01 rna ? GO:0002181 ... P0CX25 27159452
    85 5juu:UB (4.0) BS01 rna ? GO:0000462 ... P0CX29 27159452
    86 5juu:V (4.0) BS01 rna ? GO:0002181 ... P0CX49 27159452
    87 5juu:VA (4.0) BS01 rna ? GO:0000027 ... P05317 27159452
    88 5juu:VB (4.0) BS01 rna ? GO:0000462 ... P0CX31 27159452
    89 5juu:W (4.0) BS01 rna ? GO:0002181 ... P0CX82 27159452
    90 5juu:W (4.0) BS02 rna ? GO:0002181 ... P0CX82 27159452
    91 5juu:WA (4.0) BS01 rna ? GO:0001965 ... P38011 27159452
    92 5juu:WB (4.0) BS01 rna ? GO:0002181 ... Q3E792 27159452
    93 5juu:X (4.0) BS01 rna ? GO:0002181 ... P0CX23 27159452
    94 5juu:X (4.0) BS02 rna ? GO:0002181 ... P0CX23 27159452
    95 5juu:XA (4.0) BS01 rna ? GO:0000028 ... P32905 27159452
    96 5juu:XB (4.0) BS01 rna ? GO:0000054 ... P39938 27159452
    97 5juu:Y (4.0) BS01 rna ? GO:0002181 ... Q02753 27159452
    98 5juu:Y (4.0) BS02 rna ? GO:0002181 ... Q02753 27159452
    99 5juu:YA (4.0) BS01 rna ? GO:0000462 ... P33442 27159452
    100 5juu:YB (4.0) BS01 rna ? GO:0000028 ... P35997 27159452
    101 5juu:Z (4.0) BS01 rna ? GO:0002181 ... P05749 27159452
    102 5juu:ZA (4.0) BS01 rna ? GO:0000054 ... P25443 27159452
    103 5juu:ZB (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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