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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jte:AB (3.6) BS01 rna ? GO:0000028 ... P0A7V0 27380950
    2 5jte:AC (3.6) BS01 rna ? GO:0000028 ... P0A7V3 27380950
    3 5jte:AD (3.6) BS01 rna ? GO:0000028 ... P0A7V8 27380950
    4 5jte:AE (3.6) BS01 rna ? GO:0000028 ... P0A7W1 27380950
    5 5jte:AF (3.6) BS01 rna ? GO:0002181 ... P02358 27380950
    6 5jte:AG (3.6) BS01 rna ? GO:0000028 ... P02359 27380950
    7 5jte:AG (3.6) BS02 rna ? GO:0000028 ... P02359 27380950
    8 5jte:AH (3.6) BS01 rna ? GO:0000028 ... P0A7W7 27380950
    9 5jte:AI (3.6) BS01 rna ? GO:0000049 ... P0A7X3 27380950
    10 5jte:AJ (3.6) BS01 rna ? GO:0000049 ... P0A7R5 27380950
    11 5jte:AK (3.6) BS01 rna ? GO:0002181 ... P0A7R9 27380950
    12 5jte:AL (3.6) BS01 rna ? GO:0000049 ... P0A7S3 27380950
    13 5jte:AM (3.6) BS01 rna ? GO:0000049 ... P0A7S9 27380950
    14 5jte:AN (3.6) BS01 rna ? GO:0000028 ... P0AG59 27380950
    15 5jte:AO (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 27380950
    16 5jte:AO (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 27380950
    17 5jte:AP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 27380950
    18 5jte:AQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 27380950
    19 5jte:AR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 27380950
    20 5jte:AS (3.6) BS01 rna ? GO:0000028 ... P0A7U3 27380950
    21 5jte:AT (3.6) BS01 rna ? GO:0000028 ... P0A7U7 27380950
    22 5jte:AU (3.6) BS01 rna ? GO:0000028 ... P68679 27380950
    23 5jte:B0 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 27380950
    24 5jte:B1 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 27380950
    25 5jte:B2 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 27380950
    26 5jte:B3 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 27380950
    27 5jte:B4 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 27380950
    28 5jte:BC (3.6) BS01 rna ? GO:0000027 ... P60422 27380950
    29 5jte:BC (3.6) BS02 rna ? GO:0000027 ... P60422 27380950
    30 5jte:BD (3.6) BS01 rna ? GO:0000027 ... P60438 27380950
    31 5jte:BE (3.6) BS01 rna ? GO:0001070 ... P60723 27380950
    32 5jte:BF (3.6) BS01 rna ? GO:0000027 ... P62399 27380950
    33 5jte:BF (3.6) BS02 rna ? GO:0000027 ... P62399 27380950
    34 5jte:BF (3.6) BS03 rna ? GO:0000027 ... P62399 27380950
    35 5jte:BG (3.6) BS01 rna ? GO:0000027 ... P0AG55 27380950
    36 5jte:BH (3.6) BS01 rna ? GO:0002181 ... P0A7R1 27380950
    37 5jte:BI (3.6) BS01 rna ? GO:0000027 ... P0A7J7 27380950
    38 5jte:BJ (3.6) BS01 rna ? GO:0002181 ... P0AA10 27380950
    39 5jte:BK (3.6) BS01 rna ? GO:0002181 ... P0ADY3 27380950
    40 5jte:BK (3.6) BS02 rna ? GO:0002181 ... P0ADY3 27380950
    41 5jte:BL (3.6) BS01 rna ? GO:0002181 ... P02413 27380950
    42 5jte:BM (3.6) BS01 rna ? GO:0000027 ... P0ADY7 27380950
    43 5jte:BM (3.6) BS02 rna ? GO:0000027 ... P0ADY7 27380950
    44 5jte:BN (3.6) BS01 rna ? GO:0000027 ... P0AG44 27380950
    45 5jte:BO (3.6) BS01 rna ? GO:0002181 ... P0C018 27380950
    46 5jte:BO (3.6) BS02 rna ? GO:0002181 ... P0C018 27380950
    47 5jte:BP (3.6) BS01 rna ? GO:0000027 ... P0A7K6 27380950
    48 5jte:BP (3.6) BS02 rna ? GO:0000027 ... P0A7K6 27380950
    49 5jte:BQ (3.6) BS01 rna ? GO:0000027 ... P0A7L3 27380950
    50 5jte:BR (3.6) BS01 rna ? GO:0002181 ... P0AG48 27380950
    51 5jte:BS (3.6) BS01 rna ? GO:0002181 ... P61175 27380950
    52 5jte:BT (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 27380950
    53 5jte:BU (3.6) BS01 rna ? GO:0000027 ... P60624 27380950
    54 5jte:BV (3.6) BS01 rna ? GO:0000027 ... P68919 27380950
    55 5jte:BW (3.6) BS01 rna ? GO:0000027 ... P0A7L8 27380950
    56 5jte:BW (3.6) BS02 rna ? GO:0000027 ... P0A7L8 27380950
    57 5jte:BX (3.6) BS01 rna ? GO:0000027 ... P0A7M2 27380950
    58 5jte:BY (3.6) BS01 rna ? GO:0000027 ... P0A7M6 27380950
    59 5jte:BZ (3.6) BS01 rna ? GO:0000027 ... P0AG51 27380950
    60 5jte:BZ (3.6) BS02 rna ? GO:0000027 ... P0AG51 27380950
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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