Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 227 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5j3c:QB (3.04) BS01 rna ? GO:0003735 ... P80371 27681416
    2 5j3c:QB (3.04) BS02 MG ? GO:0003735 ... P80371 27681416
    3 5j3c:QC (3.04) BS01 rna ? GO:0003676 ... P80372 27681416
    4 5j3c:QD (3.04) BS01 rna ? GO:0003723 ... P80373 27681416
    5 5j3c:QD (3.04) BS02 SF4 ? GO:0003723 ... P80373 27681416
    6 5j3c:QE (3.04) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    7 5j3c:QE (3.04) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    8 5j3c:QF (3.04) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    9 5j3c:QG (3.04) BS01 rna ? GO:0000028 ... P17291 27681416
    10 5j3c:QH (3.04) BS01 rna ? GO:0003735 ... P0DOY9 27681416
    11 5j3c:QI (3.04) BS01 rna ? GO:0000049 ... P80374 27681416
    12 5j3c:QI (3.04) BS02 MG ? GO:0000049 ... P80374 27681416
    13 5j3c:QJ (3.04) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    14 5j3c:QK (3.04) BS01 rna ? GO:0003735 ... P80376 27681416
    15 5j3c:QK (3.04) BS02 MG ? GO:0003735 ... P80376 27681416
    16 5j3c:QL (3.04) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    17 5j3c:QM (3.04) BS01 rna ? GO:0000049 ... P80377 27681416
    18 5j3c:QN (3.04) BS01 rna ? GO:0003735 ... P0DOY6 27681416
    19 5j3c:QN (3.04) BS02 ZN ? GO:0003735 ... P0DOY6 27681416
    20 5j3c:QN (3.04) BS03 MG ? GO:0003735 ... P0DOY6 27681416
    21 5j3c:QO (3.04) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    22 5j3c:QP (3.04) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    23 5j3c:QQ (3.04) BS01 rna ? GO:0003735 ... P0DOY7 27681416
    24 5j3c:QR (3.04) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    25 5j3c:QS (3.04) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    26 5j3c:QT (3.04) BS01 rna ? GO:0003723 ... P80380 27681416
    27 5j3c:QY (3.04) BS01 rna ? GO:0003747 ... P0A7I0 27681416
    28 5j3c:QY (3.04) BS02 rna ? GO:0003747 ... P0A7I0 27681416
    29 5j3c:QY (3.04) BS03 rna ? GO:0003747 ... P0A7I0 27681416
    30 5j3c:QY (3.04) BS04 rna ? GO:0003747 ... P0A7I0 27681416
    31 5j3c:R0 (3.04) BS01 rna ? GO:0003735 ... P60493 27681416
    32 5j3c:R0 (3.04) BS02 rna ? GO:0003735 ... P60493 27681416
    33 5j3c:R0 (3.04) BS03 MG ? GO:0003735 ... P60493 27681416
    34 5j3c:R0 (3.04) BS04 MG ? GO:0003735 ... P60493 27681416
    35 5j3c:R0 (3.04) BS05 MG ? GO:0003735 ... P60493 27681416
    36 5j3c:R1 (3.04) BS01 rna ? GO:0003735 ... P60494 27681416
    37 5j3c:R1 (3.04) BS02 MG ? GO:0003735 ... P60494 27681416
    38 5j3c:R2 (3.04) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    39 5j3c:R3 (3.04) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    40 5j3c:R3 (3.04) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    41 5j3c:R3 (3.04) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    42 5j3c:R3 (3.04) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    43 5j3c:R4 (3.04) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    44 5j3c:R4 (3.04) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    45 5j3c:R5 (3.04) BS01 rna ? GO:0003735 ... P80339 27681416
    46 5j3c:R5 (3.04) BS02 MG ? GO:0003735 ... P80339 27681416
    47 5j3c:R5 (3.04) BS03 ZN ? GO:0003735 ... P80339 27681416
    48 5j3c:R6 (3.04) BS01 rna ? GO:0000049 ... P35871 27681416
    49 5j3c:R7 (3.04) BS01 rna ? GO:0003735 ... P80340 27681416
    50 5j3c:R7 (3.04) BS02 MG ? GO:0003735 ... P80340 27681416
    51 5j3c:R7 (3.04) BS03 MG ? GO:0003735 ... P80340 27681416
    52 5j3c:R8 (3.04) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    53 5j3c:R8 (3.04) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    54 5j3c:R9 (3.04) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    55 5j3c:R9 (3.04) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    56 5j3c:RD (3.04) BS01 rna ? GO:0002181 ... P60405 27681416
    57 5j3c:RD (3.04) BS02 rna ? GO:0002181 ... P60405 27681416
    58 5j3c:RD (3.04) BS03 MG ? GO:0002181 ... P60405 27681416
    59 5j3c:RD (3.04) BS04 MG ? GO:0002181 ... P60405 27681416
    60 5j3c:RD (3.04) BS05 MG ? GO:0002181 ... P60405 27681416
    61 5j3c:RD (3.04) BS06 MG ? GO:0002181 ... P60405 27681416
    62 5j3c:RD (3.04) BS07 MG ? GO:0002181 ... P60405 27681416
    63 5j3c:RD (3.04) BS08 MG ? GO:0002181 ... P60405 27681416
    64 5j3c:RD (3.04) BS09 MG ? GO:0002181 ... P60405 27681416
    65 5j3c:RD (3.04) BS10 MG ? GO:0002181 ... P60405 27681416
    66 5j3c:RE (3.04) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    67 5j3c:RE (3.04) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    68 5j3c:RE (3.04) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    69 5j3c:RE (3.04) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    70 5j3c:RF (3.04) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    71 5j3c:RF (3.04) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    72 5j3c:RF (3.04) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    73 5j3c:RF (3.04) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    74 5j3c:RF (3.04) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    75 5j3c:RF (3.04) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    76 5j3c:RF (3.04) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    77 5j3c:RF (3.04) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    78 5j3c:RF (3.04) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    79 5j3c:RF (3.04) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    80 5j3c:RF (3.04) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    81 5j3c:RG (3.04) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    82 5j3c:RG (3.04) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    83 5j3c:RG (3.04) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    84 5j3c:RG (3.04) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    85 5j3c:RG (3.04) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    86 5j3c:RG (3.04) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    87 5j3c:RH (3.04) BS01 rna ? GO:0002181 ... P0DOY8 27681416
    88 5j3c:RI (3.04) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    89 5j3c:RN (3.04) BS01 rna ? GO:0003729 ... P60488 27681416
    90 5j3c:RN (3.04) BS02 MG ? GO:0003729 ... P60488 27681416
    91 5j3c:RN (3.04) BS03 MG ? GO:0003729 ... P60488 27681416
    92 5j3c:RO (3.04) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    93 5j3c:RO (3.04) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    94 5j3c:RP (3.04) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    95 5j3c:RP (3.04) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    96 5j3c:RP (3.04) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    97 5j3c:RQ (3.04) BS01 rna ? GO:0000049 ... P60489 27681416
    98 5j3c:RQ (3.04) BS02 rna ? GO:0000049 ... P60489 27681416
    99 5j3c:RQ (3.04) BS03 MG ? GO:0000049 ... P60489 27681416
    100 5j3c:RQ (3.04) BS04 MG ? GO:0000049 ... P60489 27681416
    101 5j3c:RQ (3.04) BS05 MG ? GO:0000049 ... P60489 27681416
    102 5j3c:RQ (3.04) BS06 MG ? GO:0000049 ... P60489 27681416
    103 5j3c:RR (3.04) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    104 5j3c:RR (3.04) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    105 5j3c:RR (3.04) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    106 5j3c:RS (3.04) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    107 5j3c:RS (3.04) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    108 5j3c:RT (3.04) BS01 rna ? GO:0003735 ... P60490 27681416
    109 5j3c:RT (3.04) BS02 rna ? GO:0003735 ... P60490 27681416
    110 5j3c:RU (3.04) BS01 rna ? GO:0000027 ... P60491 27681416
    111 5j3c:RU (3.04) BS02 MG ? GO:0000027 ... P60491 27681416
    112 5j3c:RU (3.04) BS03 MG ? GO:0000027 ... P60491 27681416
    113 5j3c:RU (3.04) BS04 MG ? GO:0000027 ... P60491 27681416
    114 5j3c:RU (3.04) BS05 MG ? GO:0000027 ... P60491 27681416
    115 5j3c:RV (3.04) BS01 rna ? GO:0003723 ... P60492 27681416
    116 5j3c:RV (3.04) BS02 MG ? GO:0003723 ... P60492 27681416
    117 5j3c:RV (3.04) BS03 MG ? GO:0003723 ... P60492 27681416
    118 5j3c:RV (3.04) BS04 MG ? GO:0003723 ... P60492 27681416
    119 5j3c:RW (3.04) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    120 5j3c:RX (3.04) BS01 rna ? GO:0000027 ... Q5SHP0 27681416
    121 5j3c:RY (3.04) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    122 5j3c:RY (3.04) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    123 5j3c:RZ (3.04) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    124 5j3c:RZ (3.04) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    125 5j3c:RZ (3.04) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    126 5j3c:XB (3.04) BS01 rna ? GO:0003735 ... P80371 27681416
    127 5j3c:XC (3.04) BS01 rna ? GO:0003676 ... P80372 27681416
    128 5j3c:XD (3.04) BS01 rna ? GO:0003723 ... P80373 27681416
    129 5j3c:XD (3.04) BS02 SF4 ? GO:0003723 ... P80373 27681416
    130 5j3c:XE (3.04) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    131 5j3c:XE (3.04) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    132 5j3c:XF (3.04) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    133 5j3c:XF (3.04) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    134 5j3c:XG (3.04) BS01 rna ? GO:0000028 ... P17291 27681416
    135 5j3c:XH (3.04) BS01 rna ? GO:0003735 ... P0DOY9 27681416
    136 5j3c:XI (3.04) BS01 rna ? GO:0000049 ... P80374 27681416
    137 5j3c:XJ (3.04) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    138 5j3c:XK (3.04) BS01 rna ? GO:0003735 ... P80376 27681416
    139 5j3c:XL (3.04) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    140 5j3c:XM (3.04) BS01 rna ? GO:0000049 ... P80377 27681416
    141 5j3c:XN (3.04) BS01 rna ? GO:0003735 ... P0DOY6 27681416
    142 5j3c:XN (3.04) BS02 ZN ? GO:0003735 ... P0DOY6 27681416
    143 5j3c:XO (3.04) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    144 5j3c:XO (3.04) BS02 rna ? GO:0003735 ... Q5SJ76 27681416
    145 5j3c:XP (3.04) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    146 5j3c:XQ (3.04) BS01 rna ? GO:0003735 ... P0DOY7 27681416
    147 5j3c:XR (3.04) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    148 5j3c:XS (3.04) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    149 5j3c:XT (3.04) BS01 rna ? GO:0003723 ... P80380 27681416
    150 5j3c:XY (3.04) BS01 rna ? GO:0003747 ... P0A7I0 27681416
    151 5j3c:XY (3.04) BS02 rna ? GO:0003747 ... P0A7I0 27681416
    152 5j3c:XY (3.04) BS03 rna ? GO:0003747 ... P0A7I0 27681416
    153 5j3c:XY (3.04) BS04 rna ? GO:0003747 ... P0A7I0 27681416
    154 5j3c:XY (3.04) BS05 MG ? GO:0003747 ... P0A7I0 27681416
    155 5j3c:Y0 (3.04) BS01 rna ? GO:0003735 ... P60493 27681416
    156 5j3c:Y0 (3.04) BS02 rna ? GO:0003735 ... P60493 27681416
    157 5j3c:Y0 (3.04) BS03 rna ? GO:0003735 ... P60493 27681416
    158 5j3c:Y1 (3.04) BS01 rna ? GO:0003735 ... P60494 27681416
    159 5j3c:Y2 (3.04) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    160 5j3c:Y3 (3.04) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    161 5j3c:Y3 (3.04) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    162 5j3c:Y4 (3.04) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    163 5j3c:Y4 (3.04) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    164 5j3c:Y5 (3.04) BS01 rna ? GO:0003735 ... P80339 27681416
    165 5j3c:Y5 (3.04) BS02 MG ? GO:0003735 ... P80339 27681416
    166 5j3c:Y5 (3.04) BS03 ZN ? GO:0003735 ... P80339 27681416
    167 5j3c:Y6 (3.04) BS01 rna ? GO:0000049 ... P35871 27681416
    168 5j3c:Y7 (3.04) BS01 rna ? GO:0003735 ... P80340 27681416
    169 5j3c:Y7 (3.04) BS02 MG ? GO:0003735 ... P80340 27681416
    170 5j3c:Y8 (3.04) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    171 5j3c:Y9 (3.04) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    172 5j3c:Y9 (3.04) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    173 5j3c:YD (3.04) BS01 rna ? GO:0002181 ... P60405 27681416
    174 5j3c:YD (3.04) BS02 rna ? GO:0002181 ... P60405 27681416
    175 5j3c:YD (3.04) BS03 MG ? GO:0002181 ... P60405 27681416
    176 5j3c:YD (3.04) BS04 MG ? GO:0002181 ... P60405 27681416
    177 5j3c:YD (3.04) BS05 MG ? GO:0002181 ... P60405 27681416
    178 5j3c:YD (3.04) BS06 MG ? GO:0002181 ... P60405 27681416
    179 5j3c:YD (3.04) BS07 MG ? GO:0002181 ... P60405 27681416
    180 5j3c:YD (3.04) BS08 MG ? GO:0002181 ... P60405 27681416
    181 5j3c:YD (3.04) BS09 MG ? GO:0002181 ... P60405 27681416
    182 5j3c:YD (3.04) BS10 MG ? GO:0002181 ... P60405 27681416
    183 5j3c:YE (3.04) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    184 5j3c:YE (3.04) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    185 5j3c:YE (3.04) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    186 5j3c:YF (3.04) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    187 5j3c:YF (3.04) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    188 5j3c:YF (3.04) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    189 5j3c:YF (3.04) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    190 5j3c:YF (3.04) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    191 5j3c:YG (3.04) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    192 5j3c:YG (3.04) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    193 5j3c:YG (3.04) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    194 5j3c:YG (3.04) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    195 5j3c:YG (3.04) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    196 5j3c:YH (3.04) BS01 rna ? GO:0002181 ... P0DOY8 27681416
    197 5j3c:YI (3.04) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    198 5j3c:YI (3.04) BS02 rna ? GO:0003735 ... Q5SLQ1 27681416
    199 5j3c:YI (3.04) BS03 MG ? GO:0003735 ... Q5SLQ1 27681416
    200 5j3c:YN (3.04) BS01 rna ? GO:0003729 ... P60488 27681416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417