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BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5it8:AB (3.12) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    2 5it8:AB (3.12) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    3 5it8:AC (3.12) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    4 5it8:AD (3.12) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    5 5it8:AE (3.12) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    6 5it8:AF (3.12) BS01 rna ? GO:0003735 ... P02358 27382179
    7 5it8:AG (3.12) BS01 rna ? GO:0003723 ... P02359 27382179
    8 5it8:AH (3.12) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    9 5it8:AI (3.12) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    10 5it8:AJ (3.12) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    11 5it8:AK (3.12) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    12 5it8:AL (3.12) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    13 5it8:AM (3.12) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    14 5it8:AN (3.12) BS01 rna ? GO:0000028 ... P0AG59 27382179
    15 5it8:AO (3.12) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    16 5it8:AO (3.12) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    17 5it8:AP (3.12) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    18 5it8:AQ (3.12) BS01 rna ? GO:0000028 ... P0AG63 27382179
    19 5it8:AR (3.12) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    20 5it8:AS (3.12) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    21 5it8:AT (3.12) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    22 5it8:AU (3.12) BS01 rna ? GO:0003735 ... P68679 27382179
    23 5it8:BB (3.12) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    24 5it8:BB (3.12) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    25 5it8:BC (3.12) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    26 5it8:BD (3.12) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    27 5it8:BD (3.12) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    28 5it8:BE (3.12) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    29 5it8:BF (3.12) BS01 rna ? GO:0003735 ... P02358 27382179
    30 5it8:BG (3.12) BS01 rna ? GO:0003723 ... P02359 27382179
    31 5it8:BH (3.12) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    32 5it8:BI (3.12) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    33 5it8:BJ (3.12) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    34 5it8:BK (3.12) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    35 5it8:BL (3.12) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    36 5it8:BM (3.12) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    37 5it8:BN (3.12) BS01 rna ? GO:0000028 ... P0AG59 27382179
    38 5it8:BO (3.12) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    39 5it8:BO (3.12) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    40 5it8:BP (3.12) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    41 5it8:BQ (3.12) BS01 rna ? GO:0000028 ... P0AG63 27382179
    42 5it8:BR (3.12) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    43 5it8:BS (3.12) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    44 5it8:BT (3.12) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    45 5it8:BU (3.12) BS01 rna ? GO:0003735 ... P68679 27382179
    46 5it8:C0 (3.12) BS01 rna ? GO:0000027 ... P0AG51 27382179
    47 5it8:C0 (3.12) BS02 rna ? GO:0000027 ... P0AG51 27382179
    48 5it8:C1 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    49 5it8:C2 (3.12) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    50 5it8:C3 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    51 5it8:C4 (3.12) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    52 5it8:C5 (3.12) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    53 5it8:C5 (3.12) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    54 5it8:CC (3.12) BS01 rna ? GO:0000027 ... P60422 27382179
    55 5it8:CC (3.12) BS02 rna ? GO:0000027 ... P60422 27382179
    56 5it8:CD (3.12) BS01 rna ? GO:0000027 ... P60438 27382179
    57 5it8:CE (3.12) BS01 rna ? GO:0001070 ... P60723 27382179
    58 5it8:CF (3.12) BS01 rna ? GO:0000027 ... P62399 27382179
    59 5it8:CF (3.12) BS02 rna ? GO:0000027 ... P62399 27382179
    60 5it8:CG (3.12) BS01 rna ? GO:0000027 ... P0AG55 27382179
    61 5it8:CH (3.12) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    62 5it8:CJ (3.12) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    63 5it8:CK (3.12) BS01 rna ? GO:0002181 ... P0AA10 27382179
    64 5it8:CL (3.12) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    65 5it8:CL (3.12) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    66 5it8:CM (3.12) BS01 rna ? GO:0002181 ... P02413 27382179
    67 5it8:CN (3.12) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    68 5it8:CN (3.12) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    69 5it8:CO (3.12) BS01 rna ? GO:0000027 ... P0AG44 27382179
    70 5it8:CP (3.12) BS01 rna ? GO:0002181 ... P0C018 27382179
    71 5it8:CP (3.12) BS02 rna ? GO:0002181 ... P0C018 27382179
    72 5it8:CQ (3.12) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    73 5it8:CQ (3.12) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    74 5it8:CR (3.12) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    75 5it8:CS (3.12) BS01 rna ? GO:0002181 ... P0AG48 27382179
    76 5it8:CT (3.12) BS01 rna ? GO:0002181 ... P61175 27382179
    77 5it8:CU (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    78 5it8:CV (3.12) BS01 rna ? GO:0000027 ... P60624 27382179
    79 5it8:CW (3.12) BS01 rna ? GO:0000027 ... P68919 27382179
    80 5it8:CW (3.12) BS02 rna ? GO:0000027 ... P68919 27382179
    81 5it8:CX (3.12) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    82 5it8:CX (3.12) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    83 5it8:CY (3.12) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    84 5it8:CZ (3.12) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    85 5it8:D0 (3.12) BS01 rna ? GO:0000027 ... P0AG51 27382179
    86 5it8:D1 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    87 5it8:D2 (3.12) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    88 5it8:D3 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    89 5it8:D4 (3.12) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    90 5it8:D5 (3.12) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    91 5it8:D5 (3.12) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    92 5it8:DC (3.12) BS01 rna ? GO:0000027 ... P60422 27382179
    93 5it8:DD (3.12) BS01 rna ? GO:0000027 ... P60438 27382179
    94 5it8:DE (3.12) BS01 rna ? GO:0001070 ... P60723 27382179
    95 5it8:DF (3.12) BS01 rna ? GO:0000027 ... P62399 27382179
    96 5it8:DF (3.12) BS02 rna ? GO:0000027 ... P62399 27382179
    97 5it8:DG (3.12) BS01 rna ? GO:0000027 ... P0AG55 27382179
    98 5it8:DH (3.12) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    99 5it8:DH (3.12) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    100 5it8:DI (3.12) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    101 5it8:DJ (3.12) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    102 5it8:DK (3.12) BS01 rna ? GO:0002181 ... P0AA10 27382179
    103 5it8:DL (3.12) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    104 5it8:DL (3.12) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    105 5it8:DM (3.12) BS01 rna ? GO:0002181 ... P02413 27382179
    106 5it8:DN (3.12) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    107 5it8:DN (3.12) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    108 5it8:DO (3.12) BS01 rna ? GO:0000027 ... P0AG44 27382179
    109 5it8:DP (3.12) BS01 rna ? GO:0002181 ... P0C018 27382179
    110 5it8:DP (3.12) BS02 rna ? GO:0002181 ... P0C018 27382179
    111 5it8:DQ (3.12) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    112 5it8:DQ (3.12) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    113 5it8:DR (3.12) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    114 5it8:DS (3.12) BS01 rna ? GO:0002181 ... P0AG48 27382179
    115 5it8:DT (3.12) BS01 rna ? GO:0002181 ... P61175 27382179
    116 5it8:DU (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    117 5it8:DV (3.12) BS01 rna ? GO:0000027 ... P60624 27382179
    118 5it8:DW (3.12) BS01 rna ? GO:0000027 ... P68919 27382179
    119 5it8:DW (3.12) BS02 rna ? GO:0000027 ... P68919 27382179
    120 5it8:DX (3.12) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    121 5it8:DX (3.12) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    122 5it8:DY (3.12) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    123 5it8:DZ (3.12) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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