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BioLiP
Download all results in tab-seperated text for 151 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ibb:11 (2.96) BS01 rna ? GO:0002181 ... P60405 27174928
    2 5ibb:11 (2.96) BS02 rna ? GO:0002181 ... P60405 27174928
    3 5ibb:11 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    4 5ibb:12 (2.96) BS01 rna ? GO:0003735 ... P80371 27174928
    5 5ibb:15 (2.96) BS01 rna ? GO:0003729 ... P60488 27174928
    6 5ibb:19 (2.96) BS01 rna ? GO:0002181 ... P60405 27174928
    7 5ibb:19 (2.96) BS02 rna ? GO:0002181 ... P60405 27174928
    8 5ibb:19 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    9 5ibb:19 (2.96) BS04 MG ? GO:0002181 ... P60405 27174928
    10 5ibb:1A (2.96) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    11 5ibb:1E (2.96) BS01 rna ? GO:0003735 ... P80371 27174928
    12 5ibb:1I (2.96) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    13 5ibb:21 (2.96) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    14 5ibb:21 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    15 5ibb:22 (2.96) BS01 rna ? GO:0003676 ... P80372 27174928
    16 5ibb:22 (2.96) BS02 rna ? GO:0003676 ... P80372 27174928
    17 5ibb:25 (2.96) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    18 5ibb:25 (2.96) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    19 5ibb:29 (2.96) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    20 5ibb:29 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    21 5ibb:2A (2.96) BS01 rna ? GO:0003735 ... P80376 27174928
    22 5ibb:2A (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    23 5ibb:2E (2.96) BS01 rna ? GO:0003676 ... P80372 27174928
    24 5ibb:2E (2.96) BS02 rna ? GO:0003676 ... P80372 27174928
    25 5ibb:2I (2.96) BS01 rna ? GO:0003735 ... P80376 27174928
    26 5ibb:2I (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    27 5ibb:31 (2.96) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    28 5ibb:31 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    29 5ibb:32 (2.96) BS01 rna ? GO:0003723 ... P80373 27174928
    30 5ibb:32 (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    31 5ibb:35 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    32 5ibb:39 (2.96) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    33 5ibb:39 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    34 5ibb:39 (2.96) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    35 5ibb:3A (2.96) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    36 5ibb:3A (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    37 5ibb:3E (2.96) BS01 rna ? GO:0003723 ... P80373 27174928
    38 5ibb:3E (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    39 5ibb:3I (2.96) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    40 5ibb:3I (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    41 5ibb:41 (2.96) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    42 5ibb:41 (2.96) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    43 5ibb:41 (2.96) BS03 rna ? GO:0000049 ... Q5SHQ0 27174928
    44 5ibb:41 (2.96) BS04 MG ? GO:0000049 ... Q5SHQ0 27174928
    45 5ibb:42 (2.96) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    46 5ibb:42 (2.96) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    47 5ibb:42 (2.96) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    48 5ibb:45 (2.96) BS01 rna ? GO:0000049 ... P60489 27174928
    49 5ibb:45 (2.96) BS02 rna ? GO:0000049 ... P60489 27174928
    50 5ibb:45 (2.96) BS03 rna ? GO:0000049 ... P60489 27174928
    51 5ibb:49 (2.96) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    52 5ibb:49 (2.96) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    53 5ibb:49 (2.96) BS03 rna ? GO:0000049 ... Q5SHQ0 27174928
    54 5ibb:4A (2.96) BS01 rna ? GO:0000049 ... P80377 27174928
    55 5ibb:4E (2.96) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    56 5ibb:4E (2.96) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    57 5ibb:4I (2.96) BS01 rna ? GO:0000049 ... P80377 27174928
    58 5ibb:51 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    59 5ibb:52 (2.96) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    60 5ibb:55 (2.96) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    61 5ibb:58 (2.96) BS01 rna ? GO:0003729 ... P60488 27174928
    62 5ibb:59 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    63 5ibb:5A (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    64 5ibb:5A (2.96) BS02 ZN N/A GO:0003735 ... N/A 27174928
    65 5ibb:5E (2.96) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    66 5ibb:5E (2.96) BS02 MG ? GO:0003735 ... Q5SLP8 27174928
    67 5ibb:5I (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    68 5ibb:5I (2.96) BS02 MG N/A GO:0003735 ... N/A 27174928
    69 5ibb:5I (2.96) BS03 ZN N/A GO:0003735 ... N/A 27174928
    70 5ibb:61 (2.96) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    71 5ibb:62 (2.96) BS01 rna ? GO:0000028 ... P17291 27174928
    72 5ibb:62 (2.96) BS02 rna ? GO:0000028 ... P17291 27174928
    73 5ibb:65 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    74 5ibb:65 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    75 5ibb:68 (2.96) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    76 5ibb:68 (2.96) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    77 5ibb:69 (2.96) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    78 5ibb:69 (2.96) BS02 rna ? GO:0003735 ... Q5SLQ1 27174928
    79 5ibb:6A (2.96) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    80 5ibb:6A (2.96) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    81 5ibb:6E (2.96) BS01 rna ? GO:0000028 ... P17291 27174928
    82 5ibb:6E (2.96) BS02 rna ? GO:0000028 ... P17291 27174928
    83 5ibb:6I (2.96) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    84 5ibb:6I (2.96) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    85 5ibb:71 (2.96) BS01 rna ? GO:0000049 ... P27150 27174928
    86 5ibb:71 (2.96) BS02 rna ? GO:0000049 ... P27150 27174928
    87 5ibb:72 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    88 5ibb:75 (2.96) BS01 rna ? GO:0003735 ... P60490 27174928
    89 5ibb:75 (2.96) BS02 rna ? GO:0003735 ... P60490 27174928
    90 5ibb:78 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    91 5ibb:79 (2.96) BS01 rna ? GO:0000049 ... P27150 27174928
    92 5ibb:79 (2.96) BS02 rna ? GO:0000049 ... P27150 27174928
    93 5ibb:7A (2.96) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    94 5ibb:7E (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    95 5ibb:7I (2.96) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    96 5ibb:82 (2.96) BS01 rna ? GO:0000049 ... P80374 27174928
    97 5ibb:85 (2.96) BS01 rna ? GO:0000027 ... P60491 27174928
    98 5ibb:88 (2.96) BS01 rna ? GO:0000049 ... P60489 27174928
    99 5ibb:88 (2.96) BS02 rna ? GO:0000049 ... P60489 27174928
    100 5ibb:88 (2.96) BS03 rna ? GO:0000049 ... P60489 27174928
    101 5ibb:88 (2.96) BS04 MG ? GO:0000049 ... P60489 27174928
    102 5ibb:8A (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    103 5ibb:8E (2.96) BS01 rna ? GO:0000049 ... P80374 27174928
    104 5ibb:8E (2.96) BS02 rna ? GO:0000049 ... P80374 27174928
    105 5ibb:8I (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    106 5ibb:95 (2.96) BS01 rna ? GO:0003723 ... P60492 27174928
    107 5ibb:98 (2.96) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    108 5ibb:9A (2.96) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    109 5ibb:9I (2.96) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    110 5ibb:A5 (2.96) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    111 5ibb:A8 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    112 5ibb:A8 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    113 5ibb:AA (2.96) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    114 5ibb:AI (2.96) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    115 5ibb:B5 (2.96) BS01 rna ? GO:0000027 ... Q5SHP0 27174928
    116 5ibb:B8 (2.96) BS01 rna ? GO:0003735 ... P60490 27174928
    117 5ibb:B8 (2.96) BS02 rna ? GO:0003735 ... P60490 27174928
    118 5ibb:BA (2.96) BS01 rna ? GO:0003723 ... P80380 27174928
    119 5ibb:BI (2.96) BS01 rna ? GO:0003723 ... P80380 27174928
    120 5ibb:C5 (2.96) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    121 5ibb:C5 (2.96) BS02 ZN ? GO:0003723 ... Q5SHP9 27174928
    122 5ibb:C8 (2.96) BS01 rna ? GO:0000027 ... P60491 27174928
    123 5ibb:D5 (2.96) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    124 5ibb:D8 (2.96) BS01 rna ? GO:0003723 ... P60492 27174928
    125 5ibb:D8 (2.96) BS02 MG ? GO:0003723 ... P60492 27174928
    126 5ibb:E5 (2.96) BS01 rna ? GO:0003735 ... P60493 27174928
    127 5ibb:E5 (2.96) BS02 rna ? GO:0003735 ... P60493 27174928
    128 5ibb:E8 (2.96) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    129 5ibb:F5 (2.96) BS01 rna ? GO:0003735 ... P60494 27174928
    130 5ibb:F8 (2.96) BS01 rna ? GO:0000027 ... Q5SHP0 27174928
    131 5ibb:F8 (2.96) BS02 MG ? GO:0000027 ... Q5SHP0 27174928
    132 5ibb:G5 (2.96) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    133 5ibb:G8 (2.96) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    134 5ibb:G8 (2.96) BS02 ZN ? GO:0003723 ... Q5SHP9 27174928
    135 5ibb:H5 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    136 5ibb:H5 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    137 5ibb:H8 (2.96) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    138 5ibb:I5 (2.96) BS01 rna ? GO:0003735 ... Q5SJE1 27174928
    139 5ibb:I8 (2.96) BS01 rna ? GO:0003735 ... P60493 27174928
    140 5ibb:I8 (2.96) BS02 rna ? GO:0003735 ... P60493 27174928
    141 5ibb:J5 (2.96) BS01 rna ? GO:0003735 ... P80339 27174928
    142 5ibb:J8 (2.96) BS01 rna ? GO:0003735 ... P60494 27174928
    143 5ibb:K8 (2.96) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    144 5ibb:L5 (2.96) BS01 rna ? GO:0003735 ... P80340 27174928
    145 5ibb:L8 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    146 5ibb:L8 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    147 5ibb:M5 (2.96) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    148 5ibb:M8 (2.96) BS01 rna ? GO:0003735 ... Q5SJE1 27174928
    149 5ibb:N8 (2.96) BS01 rna ? GO:0003735 ... P80339 27174928
    150 5ibb:P8 (2.96) BS01 rna ? GO:0003735 ... P80340 27174928
    151 5ibb:Q8 (2.96) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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