Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5hl7:2 (3.55) BS01 rna ? GO:0003735 ... Q2FUQ0 27958389
    2 5hl7:3 (3.55) BS01 rna ? GO:0003735 ... Q2FXQ0 27958389
    3 5hl7:4 (3.55) BS01 rna ? GO:0003735 ... Q2FW29 27958389
    4 5hl7:A (3.55) BS01 rna ? GO:0002181 ... P60430 27958389
    5 5hl7:B (3.55) BS01 rna ? GO:0003735 ... Q2FW06 27958389
    6 5hl7:C (3.55) BS01 rna ? GO:0003735 ... Q2FW07 27958389
    7 5hl7:D (3.55) BS01 rna ? GO:0000049 ... Q2FW18 27958389
    8 5hl7:D (3.55) BS02 rna ? GO:0000049 ... Q2FW18 27958389
    9 5hl7:E (3.55) BS01 rna ? GO:0002181 ... Q2FW21 27958389
    10 5hl7:G (3.55) BS01 rna ? GO:0003729 ... Q2FW38 27958389
    11 5hl7:H (3.55) BS01 rna ? GO:0003735 ... Q2FW16 27958389
    12 5hl7:I (3.55) BS01 rna ? GO:0003735 ... P0A0F8 27958389
    13 5hl7:J (3.55) BS01 rna ? GO:0000049 ... Q2FW13 27958389
    14 5hl7:J (3.55) BS02 rna ? GO:0000049 ... Q2FW13 27958389
    15 5hl7:K (3.55) BS01 rna ? GO:0003735 ... Q2FW33 27958389
    16 5hl7:L (3.55) BS01 rna ? GO:0003735 ... Q2FW22 27958389
    17 5hl7:L (3.55) BS02 rna ? GO:0003735 ... Q2FW22 27958389
    18 5hl7:M (3.55) BS01 rna ? GO:0003735 ... Q2FZ42 27958389
    19 5hl7:N (3.55) BS01 rna ? GO:0000027 ... Q2FXQ1 27958389
    20 5hl7:O (3.55) BS01 rna ? GO:0003723 ... Q2FXS8 27958389
    21 5hl7:P (3.55) BS01 rna ? GO:0003735 ... Q2FW11 27958389
    22 5hl7:Q (3.55) BS01 rna ? GO:0000027 ... Q2FW08 27958389
    23 5hl7:R (3.55) BS01 rna ? GO:0003723 ... Q2FW17 27958389
    24 5hl7:S (3.55) BS01 rna ? GO:0003723 ... Q2G0S0 27958389
    25 5hl7:T (3.55) BS01 rna ? GO:0003735 ... Q2FXT0 27958389
    26 5hl7:U (3.55) BS01 rna ? GO:0003735 ... Q2FZ60 27958389
    27 5hl7:V (3.55) BS01 rna ? GO:0003735 ... Q2FW14 27958389
    28 5hl7:W (3.55) BS01 rna ? GO:0003735 ... P0A0G2 27958389
    29 5hl7:W (3.55) BS02 rna ? GO:0003735 ... P0A0G2 27958389
    30 5hl7:Z (3.55) BS01 rna ? GO:0003735 ... Q2FZF1 27958389
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218