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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gag:C (3.8) BS01 rna ? GO:0000027 ... P60422 26804923
    2 5gag:D (3.8) BS01 rna ? GO:0000027 ... P60438 26804923
    3 5gag:E (3.8) BS01 rna ? GO:0001070 ... P60723 26804923
    4 5gag:F (3.8) BS01 rna ? GO:0000027 ... P62399 26804923
    5 5gag:F (3.8) BS02 rna ? GO:0000027 ... P62399 26804923
    6 5gag:G (3.8) BS01 rna ? GO:0000027 ... P0AG55 26804923
    7 5gag:H (3.8) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    8 5gag:I (3.8) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    9 5gag:J (3.8) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    10 5gag:K (3.8) BS01 rna ? GO:0002181 ... P0AA10 26804923
    11 5gag:L (3.8) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    12 5gag:M (3.8) BS01 rna ? GO:0002181 ... P02413 26804923
    13 5gag:N (3.8) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    14 5gag:N (3.8) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    15 5gag:O (3.8) BS01 rna ? GO:0000027 ... P0AG44 26804923
    16 5gag:P (3.8) BS01 rna ? GO:0002181 ... P0C018 26804923
    17 5gag:P (3.8) BS02 rna ? GO:0002181 ... P0C018 26804923
    18 5gag:Q (3.8) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    19 5gag:R (3.8) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    20 5gag:S (3.8) BS01 rna ? GO:0002181 ... P0AG48 26804923
    21 5gag:T (3.8) BS01 rna ? GO:0002181 ... P61175 26804923
    22 5gag:U (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    23 5gag:V (3.8) BS01 rna ? GO:0000027 ... P60624 26804923
    24 5gag:W (3.8) BS01 rna ? GO:0000027 ... P68919 26804923
    25 5gag:X (3.8) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    26 5gag:X (3.8) BS02 rna ? GO:0000027 ... P0A7L8 26804923
    27 5gag:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    28 5gag:Z (3.8) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    29 5gag:a (3.8) BS01 rna ? GO:0000027 ... P0AG51 26804923
    30 5gag:b (3.8) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    31 5gag:c (3.8) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    32 5gag:d (3.8) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    33 5gag:e (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    34 5gag:f (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    35 5gag:f (3.8) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    36 5gag:i (3.8) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    37 5gag:i (3.8) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    38 5gag:i (3.8) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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