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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ef0:A (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    2 5ef0:A (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    3 5ef0:B (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    4 5ef0:B (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    5 5ef0:C (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    6 5ef0:C (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    7 5ef0:D (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    8 5ef0:D (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    9 5ef0:E (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    10 5ef0:E (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    11 5ef0:F (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    12 5ef0:F (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    13 5ef0:G (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    14 5ef0:G (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    15 5ef0:H (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    16 5ef0:H (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    17 5ef0:I (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    18 5ef0:I (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    19 5ef0:J (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    20 5ef0:J (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    21 5ef0:K (1.98) BS01 TRP ? GO:0003723 ... Q9X6J6 27139628
    22 5ef0:K (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    23 5ef0:L (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    24 5ef0:L (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    25 5ef0:L (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    26 5ef0:M (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    27 5ef0:M (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    28 5ef0:M (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    29 5ef0:N (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    30 5ef0:N (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    31 5ef0:N (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    32 5ef0:O (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    33 5ef0:O (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    34 5ef0:O (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    35 5ef0:P (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    36 5ef0:P (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    37 5ef0:P (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    38 5ef0:Q (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    39 5ef0:Q (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    40 5ef0:Q (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    41 5ef0:R (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    42 5ef0:R (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    43 5ef0:R (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    44 5ef0:S (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    45 5ef0:S (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    46 5ef0:S (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    47 5ef0:T (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    48 5ef0:T (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    49 5ef0:T (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    50 5ef0:U (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    51 5ef0:U (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    52 5ef0:U (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    53 5ef0:V (1.98) BS01 rna ? GO:0003723 ... Q9X6J6 27139628
    54 5ef0:V (1.98) BS02 TRP ? GO:0003723 ... Q9X6J6 27139628
    55 5ef0:V (1.98) BS03 TRP ? GO:0003723 ... Q9X6J6 27139628
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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