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BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dat:C0 (3.15) BS01 rna ? GO:0000054 ... Q08745 N/A
    2 5dat:C1 (3.15) BS01 rna ? GO:0000028 ... P0CX47 N/A
    3 5dat:C2 (3.15) BS01 rna ? GO:0003735 ... P48589 N/A
    4 5dat:C3 (3.15) BS01 rna ? GO:0000462 ... P05756 N/A
    5 5dat:C3 (3.15) BS02 rna ? GO:0000462 ... P05756 N/A
    6 5dat:C3 (3.15) BS03 OHX ? GO:0000462 ... P05756 N/A
    7 5dat:C4 (3.15) BS01 rna ? GO:0000028 ... P06367 N/A
    8 5dat:C5 (3.15) BS01 rna ? GO:0000028 ... Q01855 N/A
    9 5dat:C5 (3.15) BS02 OHX ? GO:0000028 ... Q01855 N/A
    10 5dat:C6 (3.15) BS01 rna ? GO:0000462 ... P0CX51 N/A
    11 5dat:C7 (3.15) BS01 rna ? GO:0000028 ... P02407 N/A
    12 5dat:C8 (3.15) BS01 rna ? GO:0000054 ... P0CX55 N/A
    13 5dat:C8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    14 5dat:C9 (3.15) BS01 rna ? GO:0000028 ... P07280 N/A
    15 5dat:D0 (3.15) BS01 rna ? GO:0000462 ... P38701 N/A
    16 5dat:D2 (3.15) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    17 5dat:D3 (3.15) BS01 rna ? GO:0000462 ... P0CX29 N/A
    18 5dat:D4 (3.15) BS01 rna ? GO:0000462 ... P0CX31 N/A
    19 5dat:D5 (3.15) BS01 rna ? GO:0002181 ... Q3E792 N/A
    20 5dat:D6 (3.15) BS01 rna ? GO:0003735 ... P39939 N/A
    21 5dat:D6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    22 5dat:D7 (3.15) BS01 rna ? GO:0000028 ... P35997 N/A
    23 5dat:D8 (3.15) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    24 5dat:D9 (3.15) BS01 rna ? GO:0002181 ... P41057 N/A
    25 5dat:D9 (3.15) BS02 MG ? GO:0002181 ... P41057 N/A
    26 5dat:D9 (3.15) BS03 ZN ? GO:0002181 ... P41057 N/A
    27 5dat:D9 (3.15) BS04 MG ? GO:0002181 ... P41057 N/A
    28 5dat:D9 (3.15) BS05 OHX ? GO:0002181 ... P41057 N/A
    29 5dat:E0 (3.15) BS01 rna ? GO:0002181 ... P0CX33 N/A
    30 5dat:E1 (3.15) BS01 rna ? GO:0003735 ... P05759 N/A
    31 5dat:E1 (3.15) BS02 ZN ? GO:0003735 ... P05759 N/A
    32 5dat:L2 (3.15) BS01 rna ? GO:0002181 ... P0CX45 N/A
    33 5dat:L2 (3.15) BS02 rna ? GO:0002181 ... P0CX45 N/A
    34 5dat:L2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    35 5dat:L3 (3.15) BS01 rna ? GO:0000027 ... P14126 N/A
    36 5dat:L3 (3.15) BS02 OHX ? GO:0000027 ... P14126 N/A
    37 5dat:L4 (3.15) BS01 rna ? GO:0002181 ... P10664 N/A
    38 5dat:L4 (3.15) BS02 rna ? GO:0002181 ... P10664 N/A
    39 5dat:L4 (3.15) BS03 OHX ? GO:0002181 ... P10664 N/A
    40 5dat:L5 (3.15) BS01 rna ? GO:0000027 ... P26321 N/A
    41 5dat:L5 (3.15) BS02 rna ? GO:0000027 ... P26321 N/A
    42 5dat:L5 (3.15) BS03 OHX ? GO:0000027 ... P26321 N/A
    43 5dat:L6 (3.15) BS01 rna ? GO:0000027 ... Q02326 N/A
    44 5dat:L7 (3.15) BS01 rna ? GO:0000463 ... P05737 N/A
    45 5dat:L7 (3.15) BS02 rna ? GO:0000463 ... P05737 N/A
    46 5dat:L7 (3.15) BS03 MG ? GO:0000463 ... P05737 N/A
    47 5dat:L8 (3.15) BS01 rna ? GO:0000470 ... P17076 N/A
    48 5dat:L8 (3.15) BS02 rna ? GO:0000470 ... P17076 N/A
    49 5dat:L9 (3.15) BS01 rna ? GO:0002181 ... P05738 N/A
    50 5dat:M0 (3.15) BS01 rna ? GO:0000027 ... P41805 N/A
    51 5dat:M0 (3.15) BS02 rna ? GO:0000027 ... P41805 N/A
    52 5dat:M0 (3.15) BS03 OHX ? GO:0000027 ... P41805 N/A
    53 5dat:M1 (3.15) BS01 rna ? GO:0000027 ... Q3E757 N/A
    54 5dat:M1 (3.15) BS02 rna ? GO:0000027 ... Q3E757 N/A
    55 5dat:M3 (3.15) BS01 rna ? GO:0002181 ... Q12690 N/A
    56 5dat:M3 (3.15) BS02 rna ? GO:0002181 ... Q12690 N/A
    57 5dat:M4 (3.15) BS01 rna ? GO:0000027 ... P36105 N/A
    58 5dat:M5 (3.15) BS01 rna ? GO:0003735 ... P05748 N/A
    59 5dat:M5 (3.15) BS02 rna ? GO:0003735 ... P05748 N/A
    60 5dat:M5 (3.15) BS03 OHX ? GO:0003735 ... P05748 N/A
    61 5dat:M6 (3.15) BS01 rna ? GO:0000470 ... P26784 N/A
    62 5dat:M6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    63 5dat:M7 (3.15) BS01 rna ? GO:0000448 ... P05740 N/A
    64 5dat:M7 (3.15) BS02 rna ? GO:0000448 ... P05740 N/A
    65 5dat:M7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    66 5dat:M7 (3.15) BS04 MG ? GO:0000448 ... P05740 N/A
    67 5dat:M7 (3.15) BS05 OHX ? GO:0000448 ... P05740 N/A
    68 5dat:M8 (3.15) BS01 rna ? GO:0002181 ... P0CX49 N/A
    69 5dat:M9 (3.15) BS01 rna ? GO:0002181 ... P0CX82 N/A
    70 5dat:M9 (3.15) BS02 rna ? GO:0002181 ... P0CX82 N/A
    71 5dat:M9 (3.15) BS03 MG ? GO:0002181 ... P0CX82 N/A
    72 5dat:M9 (3.15) BS04 OHX ? GO:0002181 ... P0CX82 N/A
    73 5dat:N0 (3.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    74 5dat:N0 (3.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    75 5dat:N1 (3.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    76 5dat:N1 (3.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    77 5dat:N1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    78 5dat:N1 (3.15) BS04 OHX ? GO:0002181 ... Q02753 N/A
    79 5dat:N2 (3.15) BS01 rna ? GO:0002181 ... P05749 N/A
    80 5dat:N3 (3.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    81 5dat:N3 (3.15) BS02 rna ? GO:0002181 ... P0CX41 N/A
    82 5dat:N4 (3.15) BS01 rna ? GO:0002181 ... P04449 N/A
    83 5dat:N4 (3.15) BS02 rna ? GO:0002181 ... P04449 N/A
    84 5dat:N5 (3.15) BS01 rna ? GO:0000027 ... P04456 N/A
    85 5dat:N5 (3.15) BS02 rna ? GO:0000027 ... P04456 N/A
    86 5dat:N5 (3.15) BS03 MG ? GO:0000027 ... P04456 N/A
    87 5dat:N6 (3.15) BS01 rna ? GO:0002181 ... P05743 N/A
    88 5dat:N6 (3.15) BS02 rna ? GO:0002181 ... P05743 N/A
    89 5dat:N6 (3.15) BS03 MG ? GO:0002181 ... P05743 N/A
    90 5dat:N7 (3.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    91 5dat:N8 (3.15) BS01 rna ? GO:0002181 ... P02406 N/A
    92 5dat:N8 (3.15) BS02 MG ? GO:0002181 ... P02406 N/A
    93 5dat:N8 (3.15) BS03 MG ? GO:0002181 ... P02406 N/A
    94 5dat:N9 (3.15) BS01 rna ? GO:0002181 ... P05747 N/A
    95 5dat:N9 (3.15) BS02 OHX ? GO:0002181 ... P05747 N/A
    96 5dat:O0 (3.15) BS01 rna ? GO:0002181 ... P14120 N/A
    97 5dat:O1 (3.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    98 5dat:O1 (3.15) BS02 OHX ? GO:0002181 ... P0C2H8 N/A
    99 5dat:O2 (3.15) BS01 rna ? GO:0002181 ... P38061 N/A
    100 5dat:O2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    101 5dat:O3 (3.15) BS01 rna ? GO:0000027 ... P05744 N/A
    102 5dat:O3 (3.15) BS02 OHX ? GO:0000027 ... P05744 N/A
    103 5dat:O4 (3.15) BS01 rna ? GO:0002181 ... P87262 N/A
    104 5dat:O4 (3.15) BS02 MG ? GO:0002181 ... P87262 N/A
    105 5dat:O5 (3.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    106 5dat:O5 (3.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    107 5dat:O5 (3.15) BS03 MG ? GO:0000463 ... P0CX84 N/A
    108 5dat:O6 (3.15) BS01 rna ? GO:0002181 ... P05745 N/A
    109 5dat:O7 (3.15) BS01 rna ? GO:0000448 ... P49166 N/A
    110 5dat:O7 (3.15) BS02 rna ? GO:0000448 ... P49166 N/A
    111 5dat:O7 (3.15) BS03 rna ? GO:0000448 ... P49166 N/A
    112 5dat:O7 (3.15) BS04 OHX ? GO:0000448 ... P49166 N/A
    113 5dat:O7 (3.15) BS05 ZN ? GO:0000448 ... P49166 N/A
    114 5dat:O7 (3.15) BS06 MG ? GO:0000448 ... P49166 N/A
    115 5dat:O7 (3.15) BS07 OHX ? GO:0000448 ... P49166 N/A
    116 5dat:O7 (3.15) BS08 OHX ? GO:0000448 ... P49166 N/A
    117 5dat:O8 (3.15) BS01 rna ? GO:0002181 ... P49167 N/A
    118 5dat:O9 (3.15) BS01 rna ? GO:0002181 ... P04650 N/A
    119 5dat:O9 (3.15) BS02 rna ? GO:0002181 ... P04650 N/A
    120 5dat:O9 (3.15) BS03 MG ? GO:0002181 ... P04650 N/A
    121 5dat:Q0 (3.15) BS01 rna ? GO:0003735 ... P0CH08 N/A
    122 5dat:Q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    123 5dat:Q0 (3.15) BS03 MG ? GO:0003735 ... P0CH08 N/A
    124 5dat:Q2 (3.15) BS01 rna ? GO:0002181 ... P0CX27 N/A
    125 5dat:Q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    126 5dat:Q2 (3.15) BS03 OHX ? GO:0002181 ... P0CX27 N/A
    127 5dat:Q3 (3.15) BS01 rna ? GO:0002181 ... P0CX25 N/A
    128 5dat:Q3 (3.15) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    129 5dat:S0 (3.15) BS01 rna ? GO:0000028 ... P32905 N/A
    130 5dat:S1 (3.15) BS01 rna ? GO:0000462 ... P33442 N/A
    131 5dat:S2 (3.15) BS01 rna ? GO:0000054 ... P25443 N/A
    132 5dat:S3 (3.15) BS01 rna ? GO:0000054 ... P05750 N/A
    133 5dat:S4 (3.15) BS01 rna ? GO:0002181 ... P0CX35 N/A
    134 5dat:S5 (3.15) BS01 rna ? GO:0000028 ... P26783 N/A
    135 5dat:S6 (3.15) BS01 rna ? GO:0000462 ... P0CX37 N/A
    136 5dat:S7 (3.15) BS01 rna ? GO:0002181 ... P26786 N/A
    137 5dat:S8 (3.15) BS01 rna ? GO:0000462 ... P0CX39 N/A
    138 5dat:S8 (3.15) BS02 rna ? GO:0000462 ... P0CX39 N/A
    139 5dat:S8 (3.15) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    140 5dat:S9 (3.15) BS01 rna ? GO:0000462 ... O13516 N/A
    141 5dat:S9 (3.15) BS02 OHX ? GO:0000462 ... O13516 N/A
    142 5dat:SM (3.15) BS01 rna ? GO:0000723 ... P39015 N/A
    143 5dat:SM (3.15) BS02 rna ? GO:0000723 ... P39015 N/A
    144 5dat:SR (3.15) BS01 rna ? GO:0001965 ... P38011 N/A
    145 5dat:SR (3.15) BS02 OHX ? GO:0001965 ... P38011 N/A
    146 5dat:c0 (3.15) BS01 rna ? GO:0000054 ... Q08745 N/A
    147 5dat:c1 (3.15) BS01 rna ? GO:0000028 ... P0CX47 N/A
    148 5dat:c2 (3.15) BS01 rna ? GO:0003735 ... P48589 N/A
    149 5dat:c3 (3.15) BS01 rna ? GO:0000462 ... P05756 N/A
    150 5dat:c3 (3.15) BS02 rna ? GO:0000462 ... P05756 N/A
    151 5dat:c3 (3.15) BS03 OHX ? GO:0000462 ... P05756 N/A
    152 5dat:c4 (3.15) BS01 rna ? GO:0000028 ... P06367 N/A
    153 5dat:c5 (3.15) BS01 rna ? GO:0000028 ... Q01855 N/A
    154 5dat:c5 (3.15) BS02 OHX ? GO:0000028 ... Q01855 N/A
    155 5dat:c6 (3.15) BS01 rna ? GO:0000462 ... P0CX51 N/A
    156 5dat:c7 (3.15) BS01 rna ? GO:0000028 ... P02407 N/A
    157 5dat:c8 (3.15) BS01 rna ? GO:0000054 ... P0CX55 N/A
    158 5dat:c8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    159 5dat:c9 (3.15) BS01 rna ? GO:0000028 ... P07280 N/A
    160 5dat:c9 (3.15) BS02 MG ? GO:0000028 ... P07280 N/A
    161 5dat:d0 (3.15) BS01 rna ? GO:0000462 ... P38701 N/A
    162 5dat:d1 (3.15) BS01 rna ? GO:0000447 ... P0C0V8 N/A
    163 5dat:d2 (3.15) BS01 rna ? GO:0003735 ... P0C0W1 N/A
    164 5dat:d3 (3.15) BS01 rna ? GO:0000462 ... P0CX29 N/A
    165 5dat:d4 (3.15) BS01 rna ? GO:0000462 ... P0CX31 N/A
    166 5dat:d5 (3.15) BS01 rna ? GO:0002181 ... Q3E792 N/A
    167 5dat:d6 (3.15) BS01 rna ? GO:0003735 ... P39939 N/A
    168 5dat:d6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    169 5dat:d6 (3.15) BS03 MG ? GO:0003735 ... P39939 N/A
    170 5dat:d7 (3.15) BS01 rna ? GO:0000028 ... P35997 N/A
    171 5dat:d8 (3.15) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    172 5dat:d9 (3.15) BS01 rna ? GO:0002181 ... P41057 N/A
    173 5dat:d9 (3.15) BS02 ZN ? GO:0002181 ... P41057 N/A
    174 5dat:e0 (3.15) BS01 rna ? GO:0002181 ... P0CX33 N/A
    175 5dat:e1 (3.15) BS01 rna ? GO:0003735 ... P05759 N/A
    176 5dat:f (3.15) BS01 rna ? GO:0002182 ... P23301 N/A
    177 5dat:l1 (3.15) BS01 rna N/A N/A N/A N/A
    178 5dat:l2 (3.15) BS01 rna ? GO:0002181 ... P0CX45 N/A
    179 5dat:l2 (3.15) BS02 rna ? GO:0002181 ... P0CX45 N/A
    180 5dat:l2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    181 5dat:l2 (3.15) BS04 MG ? GO:0002181 ... P0CX45 N/A
    182 5dat:l2 (3.15) BS05 MG ? GO:0002181 ... P0CX45 N/A
    183 5dat:l3 (3.15) BS01 rna ? GO:0000027 ... P14126 N/A
    184 5dat:l3 (3.15) BS02 MG ? GO:0000027 ... P14126 N/A
    185 5dat:l3 (3.15) BS03 OHX ? GO:0000027 ... P14126 N/A
    186 5dat:l3 (3.15) BS04 OHX ? GO:0000027 ... P14126 N/A
    187 5dat:l4 (3.15) BS01 rna ? GO:0002181 ... P10664 N/A
    188 5dat:l4 (3.15) BS02 rna ? GO:0002181 ... P10664 N/A
    189 5dat:l4 (3.15) BS03 OHX ? GO:0002181 ... P10664 N/A
    190 5dat:l5 (3.15) BS01 rna ? GO:0000027 ... P26321 N/A
    191 5dat:l5 (3.15) BS02 rna ? GO:0000027 ... P26321 N/A
    192 5dat:l5 (3.15) BS03 MG ? GO:0000027 ... P26321 N/A
    193 5dat:l5 (3.15) BS04 OHX ? GO:0000027 ... P26321 N/A
    194 5dat:l5 (3.15) BS05 OHX ? GO:0000027 ... P26321 N/A
    195 5dat:l6 (3.15) BS01 rna ? GO:0000027 ... Q02326 N/A
    196 5dat:l7 (3.15) BS01 rna ? GO:0000463 ... P05737 N/A
    197 5dat:l7 (3.15) BS02 rna ? GO:0000463 ... P05737 N/A
    198 5dat:l7 (3.15) BS03 OHX ? GO:0000463 ... P05737 N/A
    199 5dat:l8 (3.15) BS01 rna ? GO:0000470 ... P17076 N/A
    200 5dat:l8 (3.15) BS02 rna ? GO:0000470 ... P17076 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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