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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5aka:0 (5.7) BS01 rna ? GO:0000027 ... P0A7N4 25775537
    2 5aka:1 (5.7) BS01 rna ? GO:0000027 ... P0A7N9 25775537
    3 5aka:2 (5.7) BS01 rna ? GO:0002181 ... P0A7P5 25775537
    4 5aka:3 (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 25775537
    5 5aka:4 (5.7) BS01 rna ? GO:0002181 ... P0A7Q6 25775537
    6 5aka:5 (5.7) BS01 peptide 3.6.5.4 GO:0003924 ... P0AGD7 25775537
    7 5aka:5 (5.7) BS02 rna 3.6.5.4 GO:0003924 ... P0AGD7 25775537
    8 5aka:5 (5.7) BS03 rna 3.6.5.4 GO:0003924 ... P0AGD7 25775537
    9 5aka:C (5.7) BS01 rna ? GO:0000027 ... P60422 25775537
    10 5aka:D (5.7) BS01 rna ? GO:0000027 ... P60438 25775537
    11 5aka:E (5.7) BS01 rna ? GO:0001070 ... P60723 25775537
    12 5aka:F (5.7) BS01 rna ? GO:0000027 ... P62399 25775537
    13 5aka:F (5.7) BS02 rna ? GO:0000027 ... P62399 25775537
    14 5aka:G (5.7) BS01 rna ? GO:0000027 ... P0AG55 25775537
    15 5aka:H (5.7) BS01 rna ? GO:0002181 ... P0A7R1 25775537
    16 5aka:I (5.7) BS01 rna ? GO:0000027 ... P0A7J7 25775537
    17 5aka:J (5.7) BS01 rna ? GO:0002181 ... P0AA10 25775537
    18 5aka:K (5.7) BS01 rna ? GO:0002181 ... P0ADY3 25775537
    19 5aka:L (5.7) BS01 rna ? GO:0002181 ... P02413 25775537
    20 5aka:M (5.7) BS01 rna ? GO:0000027 ... P0ADY7 25775537
    21 5aka:M (5.7) BS02 rna ? GO:0000027 ... P0ADY7 25775537
    22 5aka:N (5.7) BS01 rna ? GO:0000027 ... P0AG44 25775537
    23 5aka:O (5.7) BS01 rna ? GO:0002181 ... P0C018 25775537
    24 5aka:O (5.7) BS02 rna ? GO:0002181 ... P0C018 25775537
    25 5aka:P (5.7) BS01 rna ? GO:0000027 ... P0A7K6 25775537
    26 5aka:Q (5.7) BS01 rna ? GO:0000027 ... P0A7L3 25775537
    27 5aka:R (5.7) BS01 rna ? GO:0002181 ... P0AG48 25775537
    28 5aka:S (5.7) BS01 rna ? GO:0002181 ... P61175 25775537
    29 5aka:T (5.7) BS01 rna ? GO:0000027 ... P0ADZ0 25775537
    30 5aka:U (5.7) BS01 rna ? GO:0000027 ... P60624 25775537
    31 5aka:V (5.7) BS01 rna ? GO:0000027 ... P68919 25775537
    32 5aka:W (5.7) BS01 rna ? GO:0000027 ... P0A7L8 25775537
    33 5aka:W (5.7) BS02 rna ? GO:0000027 ... P0A7L8 25775537
    34 5aka:X (5.7) BS01 rna ? GO:0000027 ... P0A7M6 25775537
    35 5aka:Y (5.7) BS01 rna ? GO:0000027 ... P0AG51 25775537
    36 5aka:Y (5.7) BS02 rna ? GO:0000027 ... P0AG51 25775537
    37 5aka:Z (5.7) BS01 rna ? GO:0002181 ... P0A7M9 25775537
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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