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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4yd9:A (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    2 4yd9:A (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    3 4yd9:A (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    4 4yd9:A (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    5 4yd9:B (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    6 4yd9:B (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    7 4yd9:C (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    8 4yd9:D (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    9 4yd9:D (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    10 4yd9:D (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    11 4yd9:D (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    12 4yd9:E (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    13 4yd9:E (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    14 4yd9:F (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    15 4yd9:G (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    16 4yd9:G (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    17 4yd9:G (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    18 4yd9:G (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    19 4yd9:H (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    20 4yd9:H (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    21 4yd9:I (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    22 4yd9:J (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    23 4yd9:J (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    24 4yd9:J (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    25 4yd9:J (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    26 4yd9:K (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    27 4yd9:K (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    28 4yd9:L (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    29 4yd9:M (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    30 4yd9:M (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    31 4yd9:M (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    32 4yd9:M (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    33 4yd9:N (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    34 4yd9:N (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    35 4yd9:O (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    36 4yd9:P (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    37 4yd9:P (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    38 4yd9:P (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    39 4yd9:P (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    40 4yd9:Q (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    41 4yd9:Q (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    42 4yd9:R (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    43 4yd9:S (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    44 4yd9:S (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    45 4yd9:S (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    46 4yd9:S (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    47 4yd9:T (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    48 4yd9:T (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    49 4yd9:U (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    50 4yd9:V (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    51 4yd9:V (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    52 4yd9:V (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    53 4yd9:V (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    54 4yd9:W (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    55 4yd9:W (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    56 4yd9:X (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    57 4yd9:Y (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    58 4yd9:Y (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    59 4yd9:Y (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    60 4yd9:Y (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    61 4yd9:Z (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    62 4yd9:Z (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    63 4yd9:a (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    64 4yd9:b (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    65 4yd9:b (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    66 4yd9:b (3.0) BS03 CUO N/A GO:0016491 ... N/A 26602184
    67 4yd9:b (3.0) BS04 CUO N/A GO:0016491 ... N/A 26602184
    68 4yd9:c (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    69 4yd9:c (3.0) BS02 CUO N/A GO:0016491 ... N/A 26602184
    70 4yd9:d (3.0) BS01 CUO N/A GO:0016491 ... N/A 26602184
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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