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BioLiP
Download all results in tab-seperated text for 145 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wqr:11 (3.15) BS01 rna ? GO:0002181 ... P60405 26037619
    2 4wqr:11 (3.15) BS02 rna ? GO:0002181 ... P60405 26037619
    3 4wqr:11 (3.15) BS03 MG ? GO:0002181 ... P60405 26037619
    4 4wqr:11 (3.15) BS04 MG ? GO:0002181 ... P60405 26037619
    5 4wqr:12 (3.15) BS01 rna ? GO:0003735 ... P80371 26037619
    6 4wqr:15 (3.15) BS01 rna ? GO:0003729 ... P60488 26037619
    7 4wqr:19 (3.15) BS01 rna ? GO:0002181 ... P60405 26037619
    8 4wqr:19 (3.15) BS02 rna ? GO:0002181 ... P60405 26037619
    9 4wqr:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    10 4wqr:1E (3.15) BS01 rna ? GO:0003735 ... P80371 26037619
    11 4wqr:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    12 4wqr:1I (3.15) BS02 MG ? GO:0000049 ... Q5SHN7 26037619
    13 4wqr:21 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    14 4wqr:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    15 4wqr:22 (3.15) BS01 rna ? GO:0003676 ... P80372 26037619
    16 4wqr:25 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    17 4wqr:25 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    18 4wqr:29 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    19 4wqr:2A (3.15) BS01 rna ? GO:0003735 ... P80376 26037619
    20 4wqr:2E (3.15) BS01 rna ? GO:0003676 ... P80372 26037619
    21 4wqr:2E (3.15) BS02 rna ? GO:0003676 ... P80372 26037619
    22 4wqr:2I (3.15) BS01 rna ? GO:0003735 ... P80376 26037619
    23 4wqr:31 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    24 4wqr:31 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    25 4wqr:31 (3.15) BS03 MG ? GO:0003735 ... Q5SHN9 26037619
    26 4wqr:32 (3.15) BS01 rna ? GO:0003723 ... P80373 26037619
    27 4wqr:32 (3.15) BS02 ZN ? GO:0003723 ... P80373 26037619
    28 4wqr:35 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    29 4wqr:39 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    30 4wqr:3A (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    31 4wqr:3E (3.15) BS01 rna ? GO:0003723 ... P80373 26037619
    32 4wqr:3E (3.15) BS02 MG ? GO:0003723 ... P80373 26037619
    33 4wqr:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    34 4wqr:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    35 4wqr:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    36 4wqr:41 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    37 4wqr:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    38 4wqr:41 (3.15) BS05 MG ? GO:0000049 ... Q5SHQ0 26037619
    39 4wqr:42 (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    40 4wqr:45 (3.15) BS01 rna ? GO:0000049 ... P60489 26037619
    41 4wqr:45 (3.15) BS02 rna ? GO:0000049 ... P60489 26037619
    42 4wqr:45 (3.15) BS03 rna ? GO:0000049 ... P60489 26037619
    43 4wqr:45 (3.15) BS04 rna ? GO:0000049 ... P60489 26037619
    44 4wqr:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    45 4wqr:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    46 4wqr:49 (3.15) BS03 MG ? GO:0000049 ... Q5SHQ0 26037619
    47 4wqr:4A (3.15) BS01 rna ? GO:0000049 ... P80377 26037619
    48 4wqr:4E (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    49 4wqr:4E (3.15) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    50 4wqr:4I (3.15) BS01 rna ? GO:0000049 ... P80377 26037619
    51 4wqr:4I (3.15) BS02 rna ? GO:0000049 ... P80377 26037619
    52 4wqr:4I (3.15) BS03 rna ? GO:0000049 ... P80377 26037619
    53 4wqr:51 (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    54 4wqr:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    55 4wqr:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    56 4wqr:58 (3.15) BS01 rna ? GO:0003729 ... P60488 26037619
    57 4wqr:59 (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    58 4wqr:5A (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    59 4wqr:5A (3.15) BS02 ZN N/A GO:0003735 ... N/A 26037619
    60 4wqr:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    61 4wqr:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    62 4wqr:5I (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    63 4wqr:5I (3.15) BS02 ZN N/A GO:0003735 ... N/A 26037619
    64 4wqr:61 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    65 4wqr:62 (3.15) BS01 rna ? GO:0000028 ... P17291 26037619
    66 4wqr:62 (3.15) BS02 rna ? GO:0000028 ... P17291 26037619
    67 4wqr:65 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    68 4wqr:65 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    69 4wqr:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    70 4wqr:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    71 4wqr:69 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    72 4wqr:69 (3.15) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    73 4wqr:6A (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    74 4wqr:6A (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    75 4wqr:6E (3.15) BS01 rna ? GO:0000028 ... P17291 26037619
    76 4wqr:6E (3.15) BS02 rna ? GO:0000028 ... P17291 26037619
    77 4wqr:6I (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    78 4wqr:6I (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    79 4wqr:72 (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    80 4wqr:75 (3.15) BS01 rna ? GO:0003735 ... P60490 26037619
    81 4wqr:75 (3.15) BS02 rna ? GO:0003735 ... P60490 26037619
    82 4wqr:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    83 4wqr:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    84 4wqr:7E (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    85 4wqr:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    86 4wqr:82 (3.15) BS01 rna ? GO:0000049 ... P80374 26037619
    87 4wqr:82 (3.15) BS02 rna ? GO:0000049 ... P80374 26037619
    88 4wqr:85 (3.15) BS01 rna ? GO:0000027 ... P60491 26037619
    89 4wqr:88 (3.15) BS01 rna ? GO:0000049 ... P60489 26037619
    90 4wqr:88 (3.15) BS02 rna ? GO:0000049 ... P60489 26037619
    91 4wqr:88 (3.15) BS03 rna ? GO:0000049 ... P60489 26037619
    92 4wqr:8A (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    93 4wqr:8E (3.15) BS01 rna ? GO:0000049 ... P80374 26037619
    94 4wqr:8E (3.15) BS02 rna ? GO:0000049 ... P80374 26037619
    95 4wqr:8I (3.15) BS01 rna N/A GO:0003735 ... N/A 26037619
    96 4wqr:95 (3.15) BS01 rna ? GO:0003723 ... P60492 26037619
    97 4wqr:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    98 4wqr:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    99 4wqr:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    100 4wqr:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    101 4wqr:A8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    102 4wqr:A8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    103 4wqr:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    104 4wqr:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    105 4wqr:B5 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    106 4wqr:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 26037619
    107 4wqr:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 26037619
    108 4wqr:BA (3.15) BS01 rna ? GO:0003723 ... P80380 26037619
    109 4wqr:BI (3.15) BS01 rna ? GO:0003723 ... P80380 26037619
    110 4wqr:C5 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    111 4wqr:C5 (3.15) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    112 4wqr:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 26037619
    113 4wqr:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    114 4wqr:D5 (3.15) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    115 4wqr:D8 (3.15) BS01 rna ? GO:0003723 ... P60492 26037619
    116 4wqr:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 26037619
    117 4wqr:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 26037619
    118 4wqr:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    119 4wqr:E8 (3.15) BS02 MG ? GO:0003735 ... Q5SHP3 26037619
    120 4wqr:F5 (3.15) BS01 rna ? GO:0003735 ... P60494 26037619
    121 4wqr:F8 (3.15) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    122 4wqr:G5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    123 4wqr:G8 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    124 4wqr:H5 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    125 4wqr:H5 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    126 4wqr:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    127 4wqr:H8 (3.15) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    128 4wqr:I5 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    129 4wqr:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 26037619
    130 4wqr:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 26037619
    131 4wqr:I8 (3.15) BS03 rna ? GO:0003735 ... P60493 26037619
    132 4wqr:J5 (3.15) BS01 rna ? GO:0003735 ... P80339 26037619
    133 4wqr:J8 (3.15) BS01 rna ? GO:0003735 ... P60494 26037619
    134 4wqr:J8 (3.15) BS02 rna ? GO:0003735 ... P60494 26037619
    135 4wqr:K5 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    136 4wqr:K8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    137 4wqr:L5 (3.15) BS01 rna ? GO:0003735 ... P80340 26037619
    138 4wqr:L8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    139 4wqr:L8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    140 4wqr:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    141 4wqr:M8 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    142 4wqr:N8 (3.15) BS01 rna ? GO:0003735 ... P80339 26037619
    143 4wqr:O8 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    144 4wqr:P8 (3.15) BS01 rna ? GO:0003735 ... P80340 26037619
    145 4wqr:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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