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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wfa:2 (3.392) BS01 rna ? GO:0003735 ... Q2FUQ0 26464510
    2 4wfa:3 (3.392) BS01 rna ? GO:0003735 ... Q2FXQ0 26464510
    3 4wfa:4 (3.392) BS01 rna ? GO:0003735 ... Q2FW29 26464510
    4 4wfa:A (3.392) BS01 rna ? GO:0002181 ... P60430 26464510
    5 4wfa:A (3.392) BS02 MG ? GO:0002181 ... P60430 26464510
    6 4wfa:B (3.392) BS01 rna ? GO:0003735 ... Q2FW06 26464510
    7 4wfa:C (3.392) BS01 rna ? GO:0003735 ... Q2FW07 26464510
    8 4wfa:D (3.392) BS01 rna ? GO:0000049 ... Q2FW18 26464510
    9 4wfa:D (3.392) BS02 rna ? GO:0000049 ... Q2FW18 26464510
    10 4wfa:E (3.392) BS01 rna ? GO:0002181 ... Q2FW21 26464510
    11 4wfa:G (3.392) BS01 rna ? GO:0003729 ... Q2FW38 26464510
    12 4wfa:H (3.392) BS01 rna ? GO:0003735 ... Q2FW16 26464510
    13 4wfa:I (3.392) BS01 rna ? GO:0003735 ... P0A0F8 26464510
    14 4wfa:J (3.392) BS01 rna ? GO:0000049 ... Q2FW13 26464510
    15 4wfa:J (3.392) BS02 rna ? GO:0000049 ... Q2FW13 26464510
    16 4wfa:K (3.392) BS01 rna ? GO:0003735 ... Q2FW33 26464510
    17 4wfa:L (3.392) BS01 rna ? GO:0003735 ... Q2FW22 26464510
    18 4wfa:L (3.392) BS02 rna ? GO:0003735 ... Q2FW22 26464510
    19 4wfa:M (3.392) BS01 rna ? GO:0003735 ... Q2FZ42 26464510
    20 4wfa:N (3.392) BS01 rna ? GO:0000027 ... Q2FXQ1 26464510
    21 4wfa:O (3.392) BS01 rna ? GO:0003723 ... Q2FXS8 26464510
    22 4wfa:P (3.392) BS01 rna ? GO:0003735 ... Q2FW11 26464510
    23 4wfa:Q (3.392) BS01 rna ? GO:0000027 ... Q2FW08 26464510
    24 4wfa:R (3.392) BS01 rna ? GO:0003723 ... Q2FW17 26464510
    25 4wfa:S (3.392) BS01 rna ? GO:0003723 ... Q2FJE0 26464510
    26 4wfa:S (3.392) BS02 rna ? GO:0003723 ... Q2FJE0 26464510
    27 4wfa:T (3.392) BS01 rna ? GO:0003735 ... Q2FXT0 26464510
    28 4wfa:U (3.392) BS01 rna ? GO:0003735 ... Q2FZ60 26464510
    29 4wfa:V (3.392) BS01 rna ? GO:0003735 ... Q2FW14 26464510
    30 4wfa:W (3.392) BS01 rna ? GO:0003735 ... P0A0G2 26464510
    31 4wfa:W (3.392) BS02 rna ? GO:0003735 ... P0A0G2 26464510
    32 4wfa:Z (3.392) BS01 rna ? GO:0003735 ... Q2FZF1 26464510
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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