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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wf9:2 (3.427) BS01 rna ? GO:0003735 ... Q2FUQ0 26464510
    2 4wf9:3 (3.427) BS01 rna ? GO:0003735 ... Q2FXQ0 26464510
    3 4wf9:A (3.427) BS01 rna ? GO:0002181 ... P60430 26464510
    4 4wf9:B (3.427) BS01 rna ? GO:0003735 ... Q2FW06 26464510
    5 4wf9:B (3.427) BS02 MG ? GO:0003735 ... Q2FW06 26464510
    6 4wf9:C (3.427) BS01 rna ? GO:0003735 ... Q2FW07 26464510
    7 4wf9:D (3.427) BS01 rna ? GO:0000049 ... Q2FW18 26464510
    8 4wf9:D (3.427) BS02 rna ? GO:0000049 ... Q2FW18 26464510
    9 4wf9:E (3.427) BS01 rna ? GO:0002181 ... Q2FW21 26464510
    10 4wf9:G (3.427) BS01 rna ? GO:0003729 ... Q2FW38 26464510
    11 4wf9:H (3.427) BS01 rna ? GO:0003735 ... Q2FW16 26464510
    12 4wf9:I (3.427) BS01 rna ? GO:0003735 ... P0A0F8 26464510
    13 4wf9:J (3.427) BS01 rna ? GO:0000049 ... Q2FW13 26464510
    14 4wf9:J (3.427) BS02 rna ? GO:0000049 ... Q2FW13 26464510
    15 4wf9:K (3.427) BS01 rna ? GO:0003735 ... Q2FW33 26464510
    16 4wf9:L (3.427) BS01 rna ? GO:0003735 ... Q2FW22 26464510
    17 4wf9:L (3.427) BS02 rna ? GO:0003735 ... Q2FW22 26464510
    18 4wf9:M (3.427) BS01 rna ? GO:0003735 ... Q2FZ42 26464510
    19 4wf9:N (3.427) BS01 rna ? GO:0000027 ... Q2FXQ1 26464510
    20 4wf9:O (3.427) BS01 rna ? GO:0003723 ... Q2FXS8 26464510
    21 4wf9:P (3.427) BS01 rna ? GO:0003735 ... Q2FW11 26464510
    22 4wf9:Q (3.427) BS01 rna ? GO:0000027 ... Q2FW08 26464510
    23 4wf9:R (3.427) BS01 rna ? GO:0003723 ... Q2FW17 26464510
    24 4wf9:S (3.427) BS01 rna ? GO:0003723 ... Q2FJE0 26464510
    25 4wf9:S (3.427) BS02 rna ? GO:0003723 ... Q2FJE0 26464510
    26 4wf9:T (3.427) BS01 rna ? GO:0003735 ... Q2FXT0 26464510
    27 4wf9:V (3.427) BS01 rna ? GO:0003735 ... Q2FW14 26464510
    28 4wf9:W (3.427) BS01 rna ? GO:0003735 ... P0A0G2 26464510
    29 4wf9:W (3.427) BS02 rna ? GO:0003735 ... P0A0G2 26464510
    30 4wf9:Z (3.427) BS01 rna ? GO:0003735 ... Q2FZF1 26464510
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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