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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 256 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9p:A0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    2 4v9p:A1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    3 4v9p:A2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    4 4v9p:A3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    5 4v9p:A3 (2.9) BS02 MG ? GO:0002181 ... P0A7Q1 23812721
    6 4v9p:A4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    7 4v9p:A4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    8 4v9p:A5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    9 4v9p:AC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    10 4v9p:AD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    11 4v9p:AE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    12 4v9p:AF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    13 4v9p:AF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    14 4v9p:AG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    15 4v9p:AG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    16 4v9p:AH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    17 4v9p:AI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    18 4v9p:AJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    19 4v9p:AK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    20 4v9p:AK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    21 4v9p:AL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    22 4v9p:AM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    23 4v9p:AM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    24 4v9p:AN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    25 4v9p:AO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    26 4v9p:AO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    27 4v9p:AP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    28 4v9p:AP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    29 4v9p:AQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    30 4v9p:AR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    31 4v9p:AS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    32 4v9p:AT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    33 4v9p:AU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    34 4v9p:AV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    35 4v9p:AV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    36 4v9p:AW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    37 4v9p:AX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    38 4v9p:AY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    39 4v9p:AZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    40 4v9p:AZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    41 4v9p:BB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    42 4v9p:BC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    43 4v9p:BD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    44 4v9p:BE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    45 4v9p:BF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    46 4v9p:BG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    47 4v9p:BH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    48 4v9p:BI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    49 4v9p:BJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    50 4v9p:BK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    51 4v9p:BL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    52 4v9p:BM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    53 4v9p:BN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    54 4v9p:BO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    55 4v9p:BO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    56 4v9p:BP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    57 4v9p:BQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    58 4v9p:BR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    59 4v9p:BS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    60 4v9p:BT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    61 4v9p:BU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    62 4v9p:BV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    63 4v9p:BV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    64 4v9p:BV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    65 4v9p:C0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    66 4v9p:C1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    67 4v9p:C2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    68 4v9p:C3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    69 4v9p:C4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    70 4v9p:C4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    71 4v9p:CC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    72 4v9p:CD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    73 4v9p:CE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    74 4v9p:CF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    75 4v9p:CF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    76 4v9p:CG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    77 4v9p:CH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    78 4v9p:CH (2.9) BS02 rna ? GO:0003735 ... P0A7R1 23812721
    79 4v9p:CI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    80 4v9p:CJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    81 4v9p:CK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    82 4v9p:CK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    83 4v9p:CL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    84 4v9p:CM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    85 4v9p:CM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    86 4v9p:CN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    87 4v9p:CO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    88 4v9p:CO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    89 4v9p:CP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    90 4v9p:CP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    91 4v9p:CQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    92 4v9p:CR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    93 4v9p:CS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    94 4v9p:CT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    95 4v9p:CU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    96 4v9p:CV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    97 4v9p:CV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    98 4v9p:CW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    99 4v9p:CX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    100 4v9p:CY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    101 4v9p:CZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    102 4v9p:CZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    103 4v9p:DB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    104 4v9p:DC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    105 4v9p:DD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    106 4v9p:DE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    107 4v9p:DF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    108 4v9p:DG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    109 4v9p:DG (2.9) BS02 rna ? GO:0000028 ... P02359 23812721
    110 4v9p:DH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    111 4v9p:DI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    112 4v9p:DJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    113 4v9p:DK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    114 4v9p:DL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    115 4v9p:DM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    116 4v9p:DN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    117 4v9p:DO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    118 4v9p:DO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    119 4v9p:DP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    120 4v9p:DQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    121 4v9p:DR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    122 4v9p:DS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    123 4v9p:DT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    124 4v9p:DU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    125 4v9p:DV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    126 4v9p:DV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    127 4v9p:DV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    128 4v9p:E0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    129 4v9p:E1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    130 4v9p:E2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    131 4v9p:E3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    132 4v9p:E4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    133 4v9p:E4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    134 4v9p:E5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    135 4v9p:EC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    136 4v9p:EC (2.9) BS02 MG ? GO:0000027 ... P60422 23812721
    137 4v9p:ED (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    138 4v9p:EE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    139 4v9p:EF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    140 4v9p:EF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    141 4v9p:EG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    142 4v9p:EG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    143 4v9p:EH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    144 4v9p:EI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    145 4v9p:EJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    146 4v9p:EK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    147 4v9p:EK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    148 4v9p:EL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    149 4v9p:EM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    150 4v9p:EM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    151 4v9p:EN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    152 4v9p:EO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    153 4v9p:EO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    154 4v9p:EP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    155 4v9p:EP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    156 4v9p:EQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    157 4v9p:ER (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    158 4v9p:ES (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    159 4v9p:ET (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    160 4v9p:EU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    161 4v9p:EV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    162 4v9p:EV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    163 4v9p:EW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    164 4v9p:EX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    165 4v9p:EY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    166 4v9p:EZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    167 4v9p:EZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    168 4v9p:FB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    169 4v9p:FC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    170 4v9p:FD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    171 4v9p:FE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    172 4v9p:FF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    173 4v9p:FG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    174 4v9p:FH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    175 4v9p:FI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    176 4v9p:FJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    177 4v9p:FK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    178 4v9p:FL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179 4v9p:FM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    180 4v9p:FN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    181 4v9p:FO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    182 4v9p:FO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    183 4v9p:FP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    184 4v9p:FQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    185 4v9p:FR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    186 4v9p:FS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    187 4v9p:FT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    188 4v9p:FU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    189 4v9p:FV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    190 4v9p:FV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    191 4v9p:FV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    192 4v9p:G0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    193 4v9p:G1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    194 4v9p:G2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    195 4v9p:G3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    196 4v9p:G4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    197 4v9p:G4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    198 4v9p:GC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    199 4v9p:GC (2.9) BS02 rna ? GO:0000027 ... P60422 23812721
    200 4v9p:GD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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