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BioLiP
Download all results in tab-seperated text for 141 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9m:AB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    2 4v9m:AC (4.0) BS01 rna ? GO:0003676 ... P62663 23812722
    3 4v9m:AC (4.0) BS02 rna ? GO:0003676 ... P62663 23812722
    4 4v9m:AD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    5 4v9m:AE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    6 4v9m:AF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    7 4v9m:AF (4.0) BS02 rna ? GO:0003735 ... P62666 23812722
    8 4v9m:AG (4.0) BS01 rna ? GO:0000028 ... P62667 23812722
    9 4v9m:AH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    10 4v9m:AI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    11 4v9m:AI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    12 4v9m:AJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    13 4v9m:AK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722
    14 4v9m:AK (4.0) BS02 rna ? GO:0003735 ... P62654 23812722
    15 4v9m:AL (4.0) BS01 rna ? GO:0000049 ... P61941 23812722
    16 4v9m:AM (4.0) BS01 rna ? GO:0000049 ... P62655 23812722
    17 4v9m:AN (4.0) BS01 rna ? GO:0003735 ... P62656 23812722
    18 4v9m:AO (4.0) BS01 rna ? GO:0003735 ... P62657 23812722
    19 4v9m:AO (4.0) BS02 rna ? GO:0003735 ... P62657 23812722
    20 4v9m:AP (4.0) BS01 rna ? GO:0003735 ... P62238 23812722
    21 4v9m:AQ (4.0) BS01 rna ? GO:0003735 ... P62658 23812722
    22 4v9m:AR (4.0) BS01 rna ? GO:0003735 ... P62659 23812722
    23 4v9m:AS (4.0) BS01 rna ? GO:0003723 ... P62660 23812722
    24 4v9m:AS (4.0) BS02 rna ? GO:0003723 ... P62660 23812722
    25 4v9m:AT (4.0) BS01 rna ? GO:0003723 ... P62661 23812722
    26 4v9m:AY (4.0) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    27 4v9m:AY (4.0) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    28 4v9m:AY (4.0) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    29 4v9m:AY (4.0) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    30 4v9m:B0 (4.0) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    31 4v9m:B0 (4.0) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    32 4v9m:B1 (4.0) BS01 rna ? GO:0003735 ... Q72G84 23812722
    33 4v9m:B1 (4.0) BS02 rna ? GO:0003735 ... Q72G84 23812722
    34 4v9m:B2 (4.0) BS01 rna ? GO:0003735 ... Q72I12 23812722
    35 4v9m:B3 (4.0) BS01 rna ? GO:0003735 ... Q72I22 23812722
    36 4v9m:B3 (4.0) BS02 rna ? GO:0003735 ... Q72I22 23812722
    37 4v9m:B4 (4.0) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    38 4v9m:B5 (4.0) BS01 rna ? GO:0003735 ... P62652 23812722
    39 4v9m:B6 (4.0) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    40 4v9m:B7 (4.0) BS01 rna ? GO:0003735 ... P80340 23812722
    41 4v9m:B8 (4.0) BS01 rna ? GO:0003735 ... Q72L77 23812722
    42 4v9m:B9 (4.0) BS01 rna ? GO:0003735 ... Q72I28 23812722
    43 4v9m:BC (4.0) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    44 4v9m:BC (4.0) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    45 4v9m:BD (4.0) BS01 rna ? GO:0002181 ... Q72I07 23812722
    46 4v9m:BD (4.0) BS02 rna ? GO:0002181 ... Q72I07 23812722
    47 4v9m:BE (4.0) BS01 rna ? GO:0003735 ... Q72I04 23812722
    48 4v9m:BF (4.0) BS01 rna ? GO:0003735 ... Q72I05 23812722
    49 4v9m:BG (4.0) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    50 4v9m:BG (4.0) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    51 4v9m:BH (4.0) BS01 rna ? GO:0002181 ... Q72I19 23812722
    52 4v9m:BJ (4.0) BS01 rna N/A N/A N/A 23812722
    53 4v9m:BK (4.0) BS01 rna ? GO:0003735 ... P62442 23812722
    54 4v9m:BN (4.0) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    55 4v9m:BO (4.0) BS01 rna ? GO:0003735 ... Q72I14 23812722
    56 4v9m:BO (4.0) BS02 rna ? GO:0003735 ... Q72I14 23812722
    57 4v9m:BP (4.0) BS01 rna ? GO:0003735 ... Q72I23 23812722
    58 4v9m:BQ (4.0) BS01 rna ? GO:0000049 ... Q72I11 23812722
    59 4v9m:BQ (4.0) BS02 rna ? GO:0000049 ... Q72I11 23812722
    60 4v9m:BR (4.0) BS01 rna ? GO:0003735 ... Q72I33 23812722
    61 4v9m:BS (4.0) BS01 rna ? GO:0003735 ... Q72I20 23812722
    62 4v9m:BS (4.0) BS02 rna ? GO:0003735 ... Q72I20 23812722
    63 4v9m:BT (4.0) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    64 4v9m:BT (4.0) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    65 4v9m:BU (4.0) BS01 rna ? GO:0000027 ... Q72L76 23812722
    66 4v9m:BV (4.0) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    67 4v9m:BW (4.0) BS01 rna ? GO:0003735 ... Q72I09 23812722
    68 4v9m:BX (4.0) BS01 rna ? GO:0000027 ... Q72I06 23812722
    69 4v9m:BY (4.0) BS01 rna ? GO:0003723 ... Q72I15 23812722
    70 4v9m:BZ (4.0) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    71 4v9m:BZ (4.0) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    72 4v9m:CB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    73 4v9m:CC (4.0) BS01 rna ? GO:0003676 ... P62663 23812722
    74 4v9m:CD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    75 4v9m:CE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    76 4v9m:CF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    77 4v9m:CG (4.0) BS01 rna ? GO:0000028 ... P62667 23812722
    78 4v9m:CH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    79 4v9m:CI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    80 4v9m:CI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    81 4v9m:CJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    82 4v9m:CK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722
    83 4v9m:CK (4.0) BS02 rna ? GO:0003735 ... P62654 23812722
    84 4v9m:CK (4.0) BS03 rna ? GO:0003735 ... P62654 23812722
    85 4v9m:CL (4.0) BS01 rna ? GO:0000049 ... P61941 23812722
    86 4v9m:CM (4.0) BS01 rna ? GO:0000049 ... P62655 23812722
    87 4v9m:CM (4.0) BS02 rna ? GO:0000049 ... P62655 23812722
    88 4v9m:CN (4.0) BS01 rna ? GO:0003735 ... P62656 23812722
    89 4v9m:CO (4.0) BS01 rna ? GO:0003735 ... P62657 23812722
    90 4v9m:CO (4.0) BS02 rna ? GO:0003735 ... P62657 23812722
    91 4v9m:CP (4.0) BS01 rna ? GO:0003735 ... P62238 23812722
    92 4v9m:CQ (4.0) BS01 rna ? GO:0003735 ... P62658 23812722
    93 4v9m:CR (4.0) BS01 rna ? GO:0003735 ... P62659 23812722
    94 4v9m:CS (4.0) BS01 rna ? GO:0003723 ... P62660 23812722
    95 4v9m:CS (4.0) BS02 rna ? GO:0003723 ... P62660 23812722
    96 4v9m:CT (4.0) BS01 rna ? GO:0003723 ... P62661 23812722
    97 4v9m:CY (4.0) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    98 4v9m:CY (4.0) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    99 4v9m:CY (4.0) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    100 4v9m:CY (4.0) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    101 4v9m:D0 (4.0) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    102 4v9m:D0 (4.0) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    103 4v9m:D1 (4.0) BS01 rna ? GO:0003735 ... Q72G84 23812722
    104 4v9m:D1 (4.0) BS02 rna ? GO:0003735 ... Q72G84 23812722
    105 4v9m:D2 (4.0) BS01 rna ? GO:0003735 ... Q72I12 23812722
    106 4v9m:D3 (4.0) BS01 rna ? GO:0003735 ... Q72I22 23812722
    107 4v9m:D3 (4.0) BS02 rna ? GO:0003735 ... Q72I22 23812722
    108 4v9m:D4 (4.0) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    109 4v9m:D5 (4.0) BS01 rna ? GO:0003735 ... P62652 23812722
    110 4v9m:D6 (4.0) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    111 4v9m:D7 (4.0) BS01 rna ? GO:0003735 ... P80340 23812722
    112 4v9m:D8 (4.0) BS01 rna ? GO:0003735 ... Q72L77 23812722
    113 4v9m:D9 (4.0) BS01 rna ? GO:0003735 ... Q72I28 23812722
    114 4v9m:DC (4.0) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    115 4v9m:DC (4.0) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    116 4v9m:DD (4.0) BS01 rna ? GO:0002181 ... Q72I07 23812722
    117 4v9m:DE (4.0) BS01 rna ? GO:0003735 ... Q72I04 23812722
    118 4v9m:DF (4.0) BS01 rna ? GO:0003735 ... Q72I05 23812722
    119 4v9m:DG (4.0) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    120 4v9m:DG (4.0) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    121 4v9m:DH (4.0) BS01 rna ? GO:0002181 ... Q72I19 23812722
    122 4v9m:DJ (4.0) BS01 rna N/A N/A N/A 23812722
    123 4v9m:DK (4.0) BS01 rna ? GO:0003735 ... P62442 23812722
    124 4v9m:DN (4.0) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    125 4v9m:DO (4.0) BS01 rna ? GO:0003735 ... Q72I14 23812722
    126 4v9m:DO (4.0) BS02 rna ? GO:0003735 ... Q72I14 23812722
    127 4v9m:DP (4.0) BS01 rna ? GO:0003735 ... Q72I23 23812722
    128 4v9m:DQ (4.0) BS01 rna ? GO:0000049 ... Q72I11 23812722
    129 4v9m:DQ (4.0) BS02 rna ? GO:0000049 ... Q72I11 23812722
    130 4v9m:DR (4.0) BS01 rna ? GO:0003735 ... Q72I33 23812722
    131 4v9m:DS (4.0) BS01 rna ? GO:0003735 ... Q72I20 23812722
    132 4v9m:DS (4.0) BS02 rna ? GO:0003735 ... Q72I20 23812722
    133 4v9m:DT (4.0) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    134 4v9m:DT (4.0) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    135 4v9m:DU (4.0) BS01 rna ? GO:0000027 ... Q72L76 23812722
    136 4v9m:DV (4.0) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    137 4v9m:DW (4.0) BS01 rna ? GO:0003735 ... Q72I09 23812722
    138 4v9m:DX (4.0) BS01 rna ? GO:0000027 ... Q72I06 23812722
    139 4v9m:DY (4.0) BS01 rna ? GO:0003723 ... Q72I15 23812722
    140 4v9m:DZ (4.0) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    141 4v9m:DZ (4.0) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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