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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9c:AB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 22902368
    2 4v9c:AB (3.3) BS02 rna ? GO:0000028 ... P0A7V0 22902368
    3 4v9c:AC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 22902368
    4 4v9c:AC (3.3) BS02 rna ? GO:0000028 ... P0A7V3 22902368
    5 4v9c:AD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 22902368
    6 4v9c:AE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 22902368
    7 4v9c:AF (3.3) BS01 rna ? GO:0002181 ... P02358 22902368
    8 4v9c:AG (3.3) BS01 rna ? GO:0000028 ... P02359 22902368
    9 4v9c:AH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 22902368
    10 4v9c:AI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 22902368
    11 4v9c:AI (3.3) BS02 rna ? GO:0000049 ... P0A7X3 22902368
    12 4v9c:AJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 22902368
    13 4v9c:AK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 22902368
    14 4v9c:AL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 22902368
    15 4v9c:AM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 22902368
    16 4v9c:AN (3.3) BS01 rna ? GO:0000028 ... P0AG59 22902368
    17 4v9c:AO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 22902368
    18 4v9c:AP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 22902368
    19 4v9c:AQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 22902368
    20 4v9c:AR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 22902368
    21 4v9c:AS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 22902368
    22 4v9c:AT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 22902368
    23 4v9c:AU (3.3) BS01 rna ? GO:0000028 ... P68679 22902368
    24 4v9c:AU (3.3) BS02 rna ? GO:0000028 ... P68679 22902368
    25 4v9c:B0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 22902368
    26 4v9c:B1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 22902368
    27 4v9c:B2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 22902368
    28 4v9c:B3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 22902368
    29 4v9c:B4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 22902368
    30 4v9c:B4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 22902368
    31 4v9c:BC (3.3) BS01 rna ? GO:0000027 ... P60422 22902368
    32 4v9c:BD (3.3) BS01 rna ? GO:0000027 ... P60438 22902368
    33 4v9c:BE (3.3) BS01 rna ? GO:0001070 ... P60723 22902368
    34 4v9c:BF (3.3) BS01 rna ? GO:0000027 ... P62399 22902368
    35 4v9c:BF (3.3) BS02 rna ? GO:0000027 ... P62399 22902368
    36 4v9c:BF (3.3) BS03 rna ? GO:0000027 ... P62399 22902368
    37 4v9c:BG (3.3) BS01 rna ? GO:0000027 ... P0AG55 22902368
    38 4v9c:BH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 22902368
    39 4v9c:BI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 22902368
    40 4v9c:BJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 22902368
    41 4v9c:BK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 22902368
    42 4v9c:BK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 22902368
    43 4v9c:BL (3.3) BS01 rna ? GO:0002181 ... P02413 22902368
    44 4v9c:BM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 22902368
    45 4v9c:BM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 22902368
    46 4v9c:BN (3.3) BS01 rna ? GO:0000027 ... P0AG44 22902368
    47 4v9c:BO (3.3) BS01 rna ? GO:0002181 ... P0C018 22902368
    48 4v9c:BO (3.3) BS02 rna ? GO:0002181 ... P0C018 22902368
    49 4v9c:BP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 22902368
    50 4v9c:BP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 22902368
    51 4v9c:BQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 22902368
    52 4v9c:BR (3.3) BS01 rna ? GO:0002181 ... P0AG48 22902368
    53 4v9c:BS (3.3) BS01 rna ? GO:0002181 ... P61175 22902368
    54 4v9c:BT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 22902368
    55 4v9c:BU (3.3) BS01 rna ? GO:0000027 ... P60624 22902368
    56 4v9c:BV (3.3) BS01 rna ? GO:0000027 ... P68919 22902368
    57 4v9c:BV (3.3) BS02 rna ? GO:0000027 ... P68919 22902368
    58 4v9c:BW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 22902368
    59 4v9c:BW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 22902368
    60 4v9c:BX (3.3) BS01 rna ? GO:0000027 ... P0A7M2 22902368
    61 4v9c:BY (3.3) BS01 rna ? GO:0000027 ... P0A7M6 22902368
    62 4v9c:BZ (3.3) BS01 rna ? GO:0000027 ... P0AG51 22902368
    63 4v9c:BZ (3.3) BS02 rna ? GO:0000027 ... P0AG51 22902368
    64 4v9c:CB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 22902368
    65 4v9c:CC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 22902368
    66 4v9c:CD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 22902368
    67 4v9c:CE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 22902368
    68 4v9c:CF (3.3) BS01 rna ? GO:0002181 ... P02358 22902368
    69 4v9c:CG (3.3) BS01 rna ? GO:0000028 ... P02359 22902368
    70 4v9c:CH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 22902368
    71 4v9c:CI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 22902368
    72 4v9c:CJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 22902368
    73 4v9c:CK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 22902368
    74 4v9c:CK (3.3) BS02 rna ? GO:0002181 ... P0A7R9 22902368
    75 4v9c:CK (3.3) BS03 rna ? GO:0002181 ... P0A7R9 22902368
    76 4v9c:CK (3.3) BS04 rna ? GO:0002181 ... P0A7R9 22902368
    77 4v9c:CL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 22902368
    78 4v9c:CM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 22902368
    79 4v9c:CN (3.3) BS01 rna ? GO:0000028 ... P0AG59 22902368
    80 4v9c:CO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 22902368
    81 4v9c:CP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 22902368
    82 4v9c:CQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 22902368
    83 4v9c:CR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 22902368
    84 4v9c:CS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 22902368
    85 4v9c:CT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 22902368
    86 4v9c:CU (3.3) BS01 rna ? GO:0000028 ... P68679 22902368
    87 4v9c:CU (3.3) BS02 rna ? GO:0000028 ... P68679 22902368
    88 4v9c:CY (3.3) BS01 rna ? GO:0002184 ... P0A805 22902368
    89 4v9c:D0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 22902368
    90 4v9c:D1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 22902368
    91 4v9c:D1 (3.3) BS02 rna ? GO:0000027 ... P0A7N9 22902368
    92 4v9c:D2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 22902368
    93 4v9c:D3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 22902368
    94 4v9c:D4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 22902368
    95 4v9c:DC (3.3) BS01 rna ? GO:0000027 ... P60422 22902368
    96 4v9c:DD (3.3) BS01 rna ? GO:0000027 ... P60438 22902368
    97 4v9c:DE (3.3) BS01 rna ? GO:0001070 ... P60723 22902368
    98 4v9c:DF (3.3) BS01 rna ? GO:0000027 ... P62399 22902368
    99 4v9c:DF (3.3) BS02 rna ? GO:0000027 ... P62399 22902368
    100 4v9c:DG (3.3) BS01 rna ? GO:0000027 ... P0AG55 22902368
    101 4v9c:DH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 22902368
    102 4v9c:DH (3.3) BS02 rna ? GO:0002181 ... P0A7R1 22902368
    103 4v9c:DI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 22902368
    104 4v9c:DJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 22902368
    105 4v9c:DK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 22902368
    106 4v9c:DK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 22902368
    107 4v9c:DL (3.3) BS01 rna ? GO:0002181 ... P02413 22902368
    108 4v9c:DM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 22902368
    109 4v9c:DM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 22902368
    110 4v9c:DN (3.3) BS01 rna ? GO:0000027 ... P0AG44 22902368
    111 4v9c:DO (3.3) BS01 rna ? GO:0002181 ... P0C018 22902368
    112 4v9c:DO (3.3) BS02 rna ? GO:0002181 ... P0C018 22902368
    113 4v9c:DP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 22902368
    114 4v9c:DP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 22902368
    115 4v9c:DQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 22902368
    116 4v9c:DR (3.3) BS01 rna ? GO:0002181 ... P0AG48 22902368
    117 4v9c:DS (3.3) BS01 rna ? GO:0002181 ... P61175 22902368
    118 4v9c:DT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 22902368
    119 4v9c:DU (3.3) BS01 rna ? GO:0000027 ... P60624 22902368
    120 4v9c:DV (3.3) BS01 rna ? GO:0000027 ... P68919 22902368
    121 4v9c:DV (3.3) BS02 rna ? GO:0000027 ... P68919 22902368
    122 4v9c:DW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 22902368
    123 4v9c:DW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 22902368
    124 4v9c:DX (3.3) BS01 rna ? GO:0000027 ... P0A7M2 22902368
    125 4v9c:DY (3.3) BS01 rna ? GO:0000027 ... P0A7M6 22902368
    126 4v9c:DZ (3.3) BS01 rna ? GO:0000027 ... P0AG51 22902368
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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